View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19664_low_9 (Length: 428)
Name: NF19664_low_9
Description: NF19664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19664_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 20585864 - 20585435
Alignment:
| Q |
1 |
attaaccagcttacgaacctccctccgtttctcccacccacctaaaccacgaacattaaaagaaataatcttcattagaaccaccaacaccctcaccacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
20585864 |
attaaccagcttacgaacctccctccgtttctcccatccacctaaaccacggacattaaaagaaataatcttcattaaaaccaccaa-accctcaccacc |
20585766 |
T |
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| Q |
101 |
caccgctcaaaaccctaaacactacttccgactcctttcacaccctcaccattcccgccaataaactctaagaactttcaacctctccaccctgcgcctg |
200 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20585765 |
cacccctcaaaaccctaaacactacttccgacccctttcacaccctcaccattcccgccaataaactcttagaactttcaacctctccaccctgcgcctg |
20585666 |
T |
|
| Q |
201 |
ccctt---tatcttcaatatgagataatgcattaaacatgttagcattaatccctttaaaatgtaccttaatagcttcacctacctctgtcacatcctta |
297 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20585665 |
cccttctttatctttaatatgagataatgcattaaacatgttagcattattccctttaaaatgtaccttaatagcttcacctacctctgtcacatcctta |
20585566 |
T |
|
| Q |
298 |
gcaatcacattctgattgacatgtaaaatcaccaaattttccctatcatcgctgctcatcgaactctttgttccctttgacaatgatacgttgttgccct |
397 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| |
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| T |
20585565 |
gcaatcacattctgattgacatgtaaaatcacacaattttccctatcattgctgctcatcgaactctttgttcccactgacaatgatacatcattgccct |
20585466 |
T |
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| Q |
398 |
tctccacccttggcatggaagtttttactac |
428 |
Q |
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|||||||| |||||||| || |||| ||||| |
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| T |
20585465 |
tctccacctttggcatgtaatttttcactac |
20585435 |
T |
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