View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19665_high_2 (Length: 499)

Name: NF19665_high_2
Description: NF19665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19665_high_2
NF19665_high_2
[»] chr6 (12 HSPs)
chr6 (19-499)||(6954170-6954650)
chr6 (23-499)||(6921005-6921477)
chr6 (40-493)||(6942618-6943077)
chr6 (25-394)||(6934989-6935343)
chr6 (23-270)||(6947760-6948007)
chr6 (227-385)||(6947597-6947755)
chr6 (24-148)||(20770594-20770718)
chr6 (91-148)||(17369675-17369732)
chr6 (279-380)||(20770819-20770920)
chr6 (32-150)||(24254426-24254544)
chr6 (275-398)||(17369850-17369973)
chr6 (411-488)||(6947493-6947572)
[»] chr7 (48 HSPs)
chr7 (23-488)||(1985617-1986082)
chr7 (227-398)||(15571650-15571821)
chr7 (32-162)||(19344563-19344693)
chr7 (239-398)||(14076803-14076962)
chr7 (239-398)||(14386831-14386990)
chr7 (254-400)||(13416661-13416807)
chr7 (27-148)||(18514789-18514910)
chr7 (79-148)||(14076677-14076746)
chr7 (79-148)||(14386705-14386774)
chr7 (27-148)||(15571897-15572018)
chr7 (25-148)||(13416913-13417036)
chr7 (64-148)||(660849-660933)
chr7 (52-148)||(22100465-22100561)
chr7 (37-151)||(22028585-22028699)
chr7 (62-148)||(22063624-22063710)
chr7 (52-148)||(19604465-19604561)
chr7 (42-130)||(22080830-22080918)
chr7 (32-151)||(19351068-19351187)
chr7 (74-148)||(20352089-20352163)
chr7 (73-143)||(22021385-22021455)
chr7 (62-127)||(9807806-9807871)
chr7 (79-151)||(19325984-19326056)
chr7 (42-130)||(22070073-22070161)
chr7 (80-148)||(29454105-29454173)
chr7 (80-148)||(29881256-29881324)
chr7 (73-132)||(20338917-20338976)
chr7 (35-146)||(36260208-36260319)
chr7 (42-148)||(6864809-6864914)
chr7 (233-315)||(19344422-19344504)
chr7 (86-148)||(29874517-29874579)
chr7 (450-499)||(18514470-18514519)
chr7 (80-148)||(12819918-12819986)
chr7 (38-134)||(15443922-15444018)
chr7 (80-148)||(29106814-29106882)
chr7 (74-134)||(29445672-29445732)
chr7 (80-148)||(29867236-29867304)
chr7 (80-148)||(29899374-29899442)
chr7 (76-151)||(19357906-19357981)
chr7 (74-148)||(20374505-20374579)
chr7 (80-146)||(36263053-36263119)
chr7 (79-148)||(20058059-20058128)
chr7 (76-148)||(18952907-18952979)
chr7 (76-148)||(18982954-18983026)
chr7 (76-148)||(18997600-18997672)
chr7 (233-301)||(19374897-19374964)
chr7 (91-127)||(20133340-20133376)
chr7 (91-127)||(20140841-20140877)
chr7 (80-148)||(29859454-29859522)
[»] scaffold0354 (2 HSPs)
scaffold0354 (239-499)||(7619-7872)
scaffold0354 (91-146)||(7474-7529)
[»] chr4 (16 HSPs)
chr4 (37-148)||(53774797-53774908)
chr4 (37-148)||(8443456-8443567)
chr4 (74-148)||(11970984-11971058)
chr4 (73-148)||(3565737-3565812)
chr4 (42-148)||(11981685-11981791)
chr4 (74-148)||(3557720-3557794)
chr4 (42-148)||(3560960-3561066)
chr4 (37-112)||(10475164-10475239)
chr4 (37-135)||(10464226-10464324)
chr4 (73-146)||(837769-837842)
chr4 (104-160)||(53790577-53790633)
chr4 (103-146)||(19359160-19359203)
chr4 (74-148)||(6372439-6372513)
chr4 (91-148)||(6392835-6392892)
chr4 (86-134)||(1686301-1686349)
chr4 (37-145)||(8447659-8447767)
[»] chr2 (8 HSPs)
chr2 (27-148)||(14514847-14514968)
chr2 (79-146)||(20975557-20975624)
chr2 (74-151)||(18908808-18908885)
chr2 (74-151)||(18920764-18920841)
chr2 (75-151)||(18913556-18913632)
chr2 (80-135)||(25698507-25698562)
chr2 (75-148)||(554471-554544)
chr2 (78-148)||(25377072-25377142)
[»] chr5 (8 HSPs)
chr5 (65-151)||(29597551-29597637)
chr5 (37-151)||(29647633-29647747)
chr5 (28-144)||(18964836-18964952)
chr5 (73-151)||(29642352-29642430)
chr5 (74-132)||(24330917-24330975)
chr5 (233-313)||(29597419-29597499)
chr5 (82-131)||(23086784-23086833)
chr5 (233-313)||(29647809-29647889)
[»] chr1 (8 HSPs)
chr1 (80-148)||(4570927-4570995)
chr1 (79-148)||(50645487-50645556)
chr1 (80-148)||(10218985-10219053)
chr1 (80-148)||(39379063-39379131)
chr1 (52-134)||(15961200-15961282)
chr1 (74-132)||(21855401-21855459)
chr1 (83-148)||(4014967-4015032)
chr1 (91-148)||(4016774-4016831)
[»] scaffold0867 (1 HSPs)
scaffold0867 (52-148)||(4671-4767)
[»] chr3 (4 HSPs)
chr3 (86-148)||(3625740-3625802)
chr3 (78-148)||(25901281-25901351)
chr3 (78-148)||(25915299-25915369)
chr3 (75-131)||(3837904-3837960)
[»] chr8 (6 HSPs)
chr8 (74-114)||(42846461-42846501)
chr8 (82-148)||(29390288-29390354)
chr8 (64-134)||(11339435-11339505)
chr8 (64-134)||(11345117-11345187)
chr8 (74-148)||(27618485-27618559)
chr8 (82-134)||(11338592-11338644)
[»] scaffold0267 (1 HSPs)
scaffold0267 (75-131)||(13385-13441)


Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 6954650 - 6954170
Alignment:
Q  19 gctgcaactctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954650 gctgcaactctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaag 6954551  T
Q  119 aatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagttcaataacaattcattatttctttgtcctcgatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6954550 aatcttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagttcaataacgattcattatttctttgtcctcgatt 6954451  T
Q  219 gaagccactgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacg 318  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6954450 gatgccactgtgtttttctaaggatggtgatacattgatatttgcaatcaatttactagaccaagcaattctctataatttaaaaaataatagagcaacg 6954351  T
Q  319 aggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgattt 418  Q
    || |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||        | ||||||||    
T  6954350 agaattaaaagtaccaataaaatttggtggtccgctgccaagggatatgttgaaagcttggtatcgacttcttgaaagtatgttttttttccgatgattt 6954251  T
Q  419 acttgtttgaatttgtgctagcttgtctatggtacaatgtattttgtgattattttcataccatggttttgatttgattat 499  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954250 acttgtttgaatttgtgttagcttgtctatggtacaatgtattttgtgattattttcataccatggttttgatttgattat 6954170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 23 - 499
Target Start/End: Complemental strand, 6921477 - 6921005
Alignment:
Q  23 caactctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatc 122  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||  || ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6921477 caactctttctgtattgatggattgcctctatttttcttatgattctaagaaaacccattttgttatctggcaaatgaaggaatttggagttgaagaatc 6921378  T
Q  123 ttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagttcaataacaattcattatttctttgtcctcgattgaag 222  Q
    ||||||||||||  |||||||||||| | ||| |||||||||  ||||||||| | |||||||  ||||  |||||||||||| | |  |||||||||      
T  6921377 ttggactcaattccttaaaattagttatacgaatcttctaaacaattttaaaactaaggagttatataatgattcattatttcatcgctctcgattgaca 6921278  T
Q  223 ccactgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgagga 322  Q
    ||| ||||||||||  ||||||||||||||||||||||||| |||||| ||| |||||| |||||||||||||||| |||| |||||||||||| ||  |    
T  6921277 ccaatgtgtttttccgagaatggtgatacattgatatttgctatcaatataccagaccaggcaattctctataattggaaagataatagagcaaagataa 6921178  T
Q  323 ttaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgatttactt 422  Q
    || |||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |        | ||||||||||||    
T  6921177 ttgaaagtaccaataaaattttgtggttcactgccaagggatatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttc-gatgatttactt 6921079  T
Q  423 gtttgaatttgtgctagcttgtctatggtacaatgtattttgtgattattttcataccatggttttgatttgattat 499  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||| |||   ||| ||||||||||||||||||||    
T  6921078 gtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgataatt---atatcatggttttgatttgattat 6921005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 40 - 493
Target Start/End: Complemental strand, 6943077 - 6942618
Alignment:
Q  40 atggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgatta 139  Q
    ||||||||||||| ||| ||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||  |||    
T  6943077 atggattgcctctatttttcttatgattttaagaaaacctattttgttatttagcaaatgaaggaatttggagttgaagaatcttagacgcaattcctta 6942978  T
Q  140 aaattagttttccgattcttctaaaagattttaaaagtcaggagttcaataacaattcattatttctttgtcctcgattgaagccactgtgtttttctaa 239  Q
    ||||||| | | | | ||||||||| |||||||||| |||||||||| ||||  |||||||||||  | ||| | |||||| |||| ||||||||||| |    
T  6942977 aaattagatatacaaatcttctaaacgattttaaaattcaggagttctataatgattcattattttatcgtcttggattgaggccattgtgtttttctga 6942878  T
Q  240 gaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaa 339  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||    
T  6942877 gaatggtgatacattgatatttgcaatcaatttactagaccaagcaattctctataatttgaaagataatagagcaaagagaattaaaagtaccaataaa 6942778  T
Q  340 atttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgatttactt-------gtttgaattt 432  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |         |||| |||| | |        |||||||||    
T  6942777 atttggtggtccactgccaagggatatgttgaaagcttggtatcaacttcttgaaagtaagtttttgtt-tgattatttccatatcatggttttgaattt 6942679  T
Q  433 gtgctagcttgtctatggtacaatgtattttgtgattattttcataccatggttttgattt 493  Q
    ||| |||||||| ||||||| |||||||||||||||||||| |||| ||||||||||||||    
T  6942678 gtgttagcttgtgtatggtagaatgtattttgtgattatttccatatcatggttttgattt 6942618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 25 - 394
Target Start/End: Complemental strand, 6935343 - 6934989
Alignment:
Q  25 actctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatctt 124  Q
    |||||||||| ||||||||||||||||| ||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  6935343 actctttctggattgatggattgcctctatttttcttatgattttaagaaaacccattatgttatttggcaaatgaaggaatttggagttcaagaatctt 6935244  T
Q  125 ggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagttcaataacaattcattatttctttgtcctcgattgaagcc 224  Q
    ||||| ||||  |||||||||||| | | | ||||| | |||||||||||| ||| |||  | || |               |  |||||||||||  ||    
T  6935243 ggactaaattccttaaaattagttataccaatcttcaacaagattttaaaactcacgagacctatta---------------tcctcctcgattgattcc 6935159  T
Q  225 actgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggatt 324  Q
    | |||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| || | |||||| ||||| ||| |||    
T  6935158 attgtgcttttctaataatggtgatacattgatatttgcaatcaatctaccagaccaagcatttctctataattggagagataatacagcaaagagaatt 6935059  T
Q  325 aaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaa 394  Q
    ||||||| |  ||||| || ||||| || ||||||||| ||||||||||| |||||||||||||||||||    
T  6935058 aaaagtaacggtaaaaatttgtggttcagtgccaagggatatgttgaaagtttggtatcgacttcttgaa 6934989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 6948007 - 6947760
Alignment:
Q  23 caactctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatc 122  Q
    ||||||||||||| |||||||||||||| ||||| ||  |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  6948007 caactctttctgtgttgatggattgcctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaagaatc 6947908  T
Q  123 ttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagttcaataacaattcattatttctttgtcctcgattgaag 222  Q
    ||||||||||||  |||||||||||| |  || ||||| ||||||| |||||| ||| |||||  ||||   | ||   | |  |  ||||| |||||      
T  6947907 ttggactcaattccttaaaattagttatgtgaatcttccaaaagatattaaaattcatgagtttcataatggtccaacctattatcctcctcaattgatt 6947808  T
Q  223 ccactgtgtttttctaagaatggtgatacattgatatttgcaatcaat 270  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  6947807 ccactgtgtttttctaacaatggtgatacattgatatttacaatcaat 6947760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 227 - 385
Target Start/End: Complemental strand, 6947755 - 6947597
Alignment:
Q  227 tgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaa 326  Q
    |||||||| ||||  |||||||||||||||||||| |||||| | ||| |||||||||| |||||||||||| || | ||||||||| || ||| |||||    
T  6947755 tgtgttttcctaacgatggtgatacattgatatttacaatcactctaccagaccaagcatttctctataattggagagataatagagtaaagagaattaa 6947656  T
Q  327 aagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcga 385  Q
    ||||||||| ||||||| ||||| || |||||| || |||||||||||||||| |||||    
T  6947655 aagtaccaacaaaattttgtggttcagtgccaatggatatgttgaaagcttggcatcga 6947597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 20770594 - 20770718
Alignment:
Q  24 aactctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatct 123  Q
    |||||||| ||| |||||||||||  | ||||| ||| ||||| | || |||||  |||||||||| ||||||||||||||||||||| ||||||| ||     
T  20770594 aactctttgtgtgttgatggattgtatttgtttttctcatgatgttaaaaaaacttattttgttatatggcaaatgaaggaatttggaattgaagagtca 20770693  T
Q  124 tggactcaattgattaaaattagtt 148  Q
    |||| ||||||  ||||||||||||    
T  20770694 tggattcaattccttaaaattagtt 20770718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 17369675 - 17369732
Alignment:
Q  91 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagtt 17369732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 380
Target Start/End: Original strand, 20770819 - 20770920
Alignment:
Q  279 ccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttg 378  Q
    ||||||||| ||||||||||||||| ||||||||  || ||| ||| |||||||| || ||||||||||||  | ||| |||| |||||||||||| |||    
T  20770819 ccaagcaatcctctataatttgaaagataatagactaaagagaattgaaagtacctatgaaatttggtggtatagtgctaaggattatgttgaaagtttg 20770918  T
Q  379 gt 380  Q
    ||    
T  20770919 gt 20770920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 24254544 - 24254426
Alignment:
Q  32 ctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactca 131  Q
    |||| |||||||| ||||| ||||| ||| |  || |||| | ||| ||||||||||| ||||| |||  |||||||||||| ||| |||||||||||||    
T  24254544 ctgtgttgatggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagtcgaacaatcttggactca 24254445  T
Q  132 attgattaaaattagtttt 150  Q
    ||| || ||||| ||||||    
T  24254444 attcatcaaaatcagtttt 24254426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 398
Target Start/End: Original strand, 17369850 - 17369973
Alignment:
Q  275 gagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaag 374  Q
    ||||||||| |||||||||||||| || ||||||||||| || ||  ||| ||| |||| ||| ||||   |||    || ||||||| |||||||||||    
T  17369850 gagaccaagaaattctctataattggagaaataatagagtaaagaaaattgaaaatacctatagaattatttggaaggcttccaagggctatgttgaaag 17369949  T
Q  375 cttggtatcgacttcttgaaagta 398  Q
    ||||||||| |||| |||||||||    
T  17369950 cttggtatctacttgttgaaagta 17369973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 488
Target Start/End: Complemental strand, 6947572 - 6947493
Alignment:
Q  411 gatgatttacttgtttgaatttgtgctagcttgtctatg--gtacaatgtattttgtgattattttcataccatggtttt 488  Q
    ||||||||||||||||| ||||| | ||| || | ||||  ||||||| |||| |||||||||||||| | |||||||||    
T  6947572 gatgatttacttgtttgtatttgagttagtttatgtatgatgtacaatatattgtgtgattattttcaaatcatggtttt 6947493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 48)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 23 - 488
Target Start/End: Complemental strand, 1986082 - 1985617
Alignment:
Q  23 caactctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatc 122  Q
    ||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  1986082 caactctttctgtgttgatggattgcctctatttttcttatgatttcaagaaaacccattttgttctttggcaaatgaaggaatttggcgttgaagaatc 1985983  T
Q  123 ttggactcaattgattaaaattagttttccgattcttctaaaagattttaaaagtcaggagttcaataacaattcattatttctttgtcctcgattgaag 222  Q
    ||||||||||||| |||||||||||| |  || ||||||| ||||| |||||| ||| | |||||||||   | ||   | |  |  |||||||||||      
T  1985982 ttggactcaattgtttaaaattagttatatgaatcttctagaagatattaaaattcatgggttcaataatggtccaacctattatcctcctcgattgact 1985883  T
Q  223 ccactgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgagga 322  Q
    ||| ||| ||||||  ||||||||||||||||||||||||||||||||  |  |||||||||| |||||||||||  || | ||||||||| |   || |    
T  1985882 ccattgtatttttccgagaatggtgatacattgatatttgcaatcaatccaacagaccaagcatttctctataataggagagataatagagtagaaagaa 1985783  T
Q  323 ttaaaagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgatttactt 422  Q
    ||||||||||||||| ||||| ||||| || ||||||||| || ||||||||||||||||||| |||||||| ||| |        | ||||||||||||    
T  1985782 ttaaaagtaccaatagaattttgtggttcagtgccaagggatacgttgaaagcttggtatcgatttcttgaaggtaagtttctcttc-gatgatttactt 1985684  T
Q  423 gtttgaatttgtgctagcttgtctatg-gtacaatgtattttgtgattattttcataccatggtttt 488  Q
    ||||||||||||| ||| |||| ||||  |||||| |||| |||||||||||||| | |||||||||    
T  1985683 gtttgaatttgtgttagtttgtgtatgtatacaatatattgtgtgattattttcaaatcatggtttt 1985617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 227 - 398
Target Start/End: Complemental strand, 15571821 - 15571650
Alignment:
Q  227 tgtgtttttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaa 326  Q
    ||||| ||||| |||| ||||||||  |||||||||||||||||    ||||||||| |||| | ||||||| || | ||||||||| || ||| |||||    
T  15571821 tgtgtgtttctgagaacggtgatactgtgatatttgcaatcaatcgtagagaccaagtaattgtttataattggagatataatagagtaaagagaattaa 15571722  T
Q  327 aagtaccaataaaatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagta 398  Q
    ||||| ||| |||||  | ||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||    
T  15571721 aagtaacaaaaaaatccgttggtccaatgccaggggatatgttgaaagcttggtatcgacttcctgaaagta 15571650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 19344693 - 19344563
Alignment:
Q  32 ctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactca 131  Q
    ||||||||||||| ||||| ||||| ||| |  || |||| || || ||||||||||| ||||| |||| |||||||||||||||| |||||||||||||    
T  19344693 ctgtattgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggactca 19344594  T
Q  132 attgattaaaattagttttccgattcttcta 162  Q
    |||  ||||||||||||||| || |||||||    
T  19344593 atttcttaaaattagttttcagaatcttcta 19344563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 398
Target Start/End: Original strand, 14076803 - 14076962
Alignment:
Q  239 agaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataa 338  Q
    |||| |||| |||||||||||| | |||||||| | || ||||||||||| ||||||||| || | ||||||||| || ||| ||||||| ||||||||     
T  14076803 agaaaggtggtacattgatattgggaatcaattcaggaaaccaagcaattatctataattggagagataatagagtaaagagaattaaaaataccaatag 14076902  T
Q  339 aatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagta 398  Q
    ||||| |||||    | |||||  |||||||||||||||||||||||||| | |||||||    
T  14076903 aattttgtggttgcattccaagaattatgttgaaagcttggtatcgacttttagaaagta 14076962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 398
Target Start/End: Original strand, 14386831 - 14386990
Alignment:
Q  239 agaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataa 338  Q
    |||| |||| |||||||||||| | |||||||| | || ||||||||||| ||||||||| || | ||||||||| || ||| ||||||| ||||||||     
T  14386831 agaaaggtggtacattgatattgggaatcaattcaggaaaccaagcaattatctataattggagagataatagagtaaagagaattaaaaataccaatag 14386930  T
Q  339 aatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagta 398  Q
    ||||| |||||    | |||||  |||||||||||||||||||||||||| | |||||||    
T  14386931 aattttgtggttgcattccaagaattatgttgaaagcttggtatcgacttttagaaagta 14386990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 400
Target Start/End: Complemental strand, 13416807 - 13416661
Alignment:
Q  254 tgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaataaaatttggtggtccac 353  Q
    |||||||||||||||||   | |||||||| ||||| ||| |||  || | ||||||||| || ||| ||||||||| ||||| |||||||||||| |      
T  13416807 tgatatttgcaatcaatcgtctagaccaagtaattcactacaataggagagataatagagtaaagagaattaaaagtcccaatcaaatttggtggttcga 13416708  T
Q  354 tgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatg 400  Q
     |||||||| ||||||||||||||||||||||||||  |||||||||    
T  13416707 cgccaagggatatgttgaaagcttggtatcgacttcaagaaagtatg 13416661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 18514910 - 18514789
Alignment:
Q  27 tctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttgg 126  Q
    ||||||||| || ||||||||| | ||||| |||||||||||||| |||| ||||||  |||| ||| ||||| | ||||||||||||||| | ||||||    
T  18514910 tctttctgttttaatggattgcatgtgtttttcttatgatttcaagaaaagccatttcattatatggaaaatggacgaatttggagttgaaaactcttgg 18514811  T
Q  127 actcaattgattaaaattagtt 148  Q
    ||||||||  ||||||||||||    
T  18514810 actcaattccttaaaattagtt 18514789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 14076677 - 14076746
Alignment:
Q  79 cattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  14076677 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagtt 14076746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 14386705 - 14386774
Alignment:
Q  79 cattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  14386705 catttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagtt 14386774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 15572018 - 15571897
Alignment:
Q  27 tctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttgg 126  Q
    ||||||||| || |||||||| || ||||| ||||||||||||||   |||||||||||| || |||||||||| ||| |||||||||||||| ||||||    
T  15572018 tctttctgtgtttatggattgtctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgg 15571919  T
Q  127 actcaattgattaaaattagtt 148  Q
      ||||||   |||||||||||    
T  15571918 gttcaattccataaaattagtt 15571897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 13417036 - 13416913
Alignment:
Q  25 actctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatctt 124  Q
    ||||||||| | ||||  ||||| || ||||| ||||||||||| || |||||| ||||| | || ||||||||||||||||||||||||||||| ||||    
T  13417036 actctttctatgttgaatgattgtctttgtttttcttatgattttaagaaaacctattttatcatatggcaaatgaaggaatttggagttgaagagtctt 13416937  T
Q  125 ggactcaattgattaaaattagtt 148  Q
    ||  | ||||  ||||||||||||    
T  13416936 gggttgaattcgttaaaattagtt 13416913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 660933 - 660849
Alignment:
Q  64 gatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||||  |||| | ||||||||| ||||| |||||||||||| |||||||||| ||||||||||||||  ||||||||||||    
T  660933 gatttcaaacaaactcgttttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagtt 660849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 22100465 - 22100561
Alignment:
Q  52 tgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| ||| |||||||||| ||||| |||||| |||| |||||||||||| ||||||||||| |||| ||||||||||| ||  | ||||||||||    
T  22100465 tgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 22100561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 22028585 - 22028699
Alignment:
Q  37 ttgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattga 136  Q
    |||||||||||||| ||||| ||| | |   ||||  |||||||||||||||| ||| |||||| ||| | |||||||||||| ||||||||||||||      
T  22028585 ttgatggattgcctttgtttttctgaagtggtcaaggaaacccattttgttatatggaaaatgacggattatggagttgaagagtcttggactcaattac 22028684  T
Q  137 ttaaaattagttttc 151  Q
    |||| ||||||||||    
T  22028685 ttaagattagttttc 22028699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 22063624 - 22063710
Alignment:
Q  62 atgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||| || |||| ||||||||||| ||  | ||||||||||    
T  22063624 atgatttcaaacaaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagtt 22063710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 19604561 - 19604465
Alignment:
Q  52 tgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| ||| |||||||  | ||||| || ||| |||| ||||| ||||||||||||||||||||||| || |||||||||||  ||||||||||||    
T  19604561 tgtttttctcatgattttcataaaactcactttattatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagtt 19604465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 22080830 - 22080918
Alignment:
Q  42 ggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactc 130  Q
    |||||| || ||||| ||| ||||||||||  |||| |||||| |||| |||||||||||| ||||||||||| |||| ||||||||||    
T  22080830 ggattgtctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactc 22080918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 19351187 - 19351068
Alignment:
Q  32 ctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactca 131  Q
    |||||||||||||||| || ||||| ||| |  || |||| |  |||||||||||| | ||||| |||| ||||||||||||||| || ||||||||||     
T  19351187 ctgtattgatggattgtctatgtttttctcacaatctcaaaaggacccattttgttttatggcagatgatggaatttggagttgaggagtcttggactcc 19351088  T
Q  132 attgattaaaattagttttc 151  Q
    |||  | |||||||||||||    
T  19351087 attcctcaaaattagttttc 19351068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 20352089 - 20352163
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||| |||||||| || ||| ||||||||||||||||||||||||| || ||||||||| |  ||||||||||||    
T  20352089 aaactcattttgtaatatgggaaatgaaggaatttggagttgaagattcatggactcaactttttaaaattagtt 20352163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 22021385 - 22021455
Alignment:
Q  73 aaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaat 143  Q
    ||||||||||| ||||| ||||| |||| ||| | |||||||||||||||||||||||||||  |||||||    
T  22021385 aaaacccatttggttatatggcagatgatggattatggagttgaagaatcttggactcaattacttaaaat 22021455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 9807806 - 9807871
Alignment:
Q  62 atgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttgga 127  Q
    ||||||| || |||||| |||| ||||| ||||| ||||||||||||||||||||||| |||||||    
T  9807806 atgatttgaagaaaaccgatttcgttatatggcagatgaaggaatttggagttgaagagtcttgga 9807871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 19326056 - 19325984
Alignment:
Q  79 cattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 151  Q
    ||||||||||| ||||| |||  |||||||||||| ||| |||||||||||||||| || ||||| |||||||    
T  19326056 cattttgttatatggcatatgtcggaatttggagtagaacaatcttggactcaattcatcaaaatcagttttc 19325984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 22070073 - 22070161
Alignment:
Q  42 ggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactc 130  Q
    |||||| || ||||| ||| ||||||||||   ||| |||||| |||| |||||||||||| ||||||||||| |||| ||||||||||    
T  22070073 ggattgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactc 22070161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 29454173 - 29454105
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||||| ||||  |||| | |||||||||||||||| ||||||||||||||  ||||||||||||    
T  29454173 attttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagtt 29454105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 29881256 - 29881324
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| || |||||||||||||| ||||||| |||||||| ||||||||||||||  ||| ||||||||    
T  29881256 attttattgtttggcaaatgaagaaatttggggttgaagattcttggactcaattccttagaattagtt 29881324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 20338917 - 20338976
Alignment:
Q  73 aaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaa 132  Q
    ||||| |||||||| || ||| ||||||||||||| ||||||||||| ||||||||||||    
T  20338917 aaaactcattttgtaatatggaaaatgaaggaattaggagttgaagattcttggactcaa 20338976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 146
Target Start/End: Original strand, 36260208 - 36260319
Alignment:
Q  35 tattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 134  Q
    ||||| ||||||| || || || ||| |||||| ||| |||||  |||||||||| ||| | ||| | ||||||||||||||||| ||||||| |||| |    
T  36260208 tattgttggattgtctttgcttttctaatgattacaagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggattcaact 36260307  T
Q  135 gattaaaattag 146  Q
     |||||||||||    
T  36260308 tattaaaattag 36260319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 6864914 - 6864809
Alignment:
Q  42 ggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaa 141  Q
    |||||| |||| ||| ||| ||||||||||  |||| ||||| || || |||  |||||||||||||||||||||||| ||||||||||| ||  |||||    
T  6864914 ggattgtctctatttttctcatgatttcaaacaaactcattt-gtaatatggttaatgaaggaatttggagttgaagagtcttggactcagttccttaaa 6864816  T
Q  142 attagtt 148  Q
    | |||||    
T  6864815 actagtt 6864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 19344504 - 19344422
Alignment:
Q  233 tttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagagca 315  Q
    ||||||| |||||||||||| || |||| |||| || | ||  |||||||||||||||||||||||||| | | |||||||||    
T  19344504 tttctaaaaatggtgatacactgctattggcaaacactataaaagaccaagcaattctctataatttgagagacaatagagca 19344422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 29874517 - 29874579
Alignment:
Q  86 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||| |||||||||||| ||||||| |||||||| |||||||||| |||  ||||||||||||    
T  29874517 ttatatggcaaatgaagaaatttggggttgaagattcttggactccattacttaaaattagtt 29874579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 18514519 - 18514470
Alignment:
Q  450 gtacaatgtattttgtgattattttcataccatggttttgatttgattat 499  Q
    |||||||||||  ||| |||||||||||| ||||||||||||||||||||    
T  18514519 gtacaatgtatcgtgtcattattttcatatcatggttttgatttgattat 18514470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 12819986 - 12819918
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||| | ||||| |||| |||||||||||||||| |||| |||||||||||  ||||||| ||||    
T  12819986 attttgttgtatggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaatcagtt 12819918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 134
Target Start/End: Original strand, 15443922 - 15444018
Alignment:
Q  38 tgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 134  Q
    |||||||||| || ||||| |||||||||| ||| | |||    |||||| | ||||| |||||||| | |||||||||||| ||||||||||||||    
T  15443922 tgatggattgtctttgtttttcttatgattccaatacaactggatttgttttatggcatatgaaggagtatggagttgaagagtcttggactcaatt 15444018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 29106814 - 29106882
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||| | ||||| |||||| ||||||| |||||||| |||||||||||| |  ||||||||||||    
T  29106814 attttgttgtatggcagatgaagaaatttggggttgaagagtcttggactcaactttttaaaattagtt 29106882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 29445732 - 29445672
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 134  Q
    ||||| ||||| |||| ||||| ||||||||||| || |||||||| ||||||||||||||    
T  29445732 aaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggactcaatt 29445672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 29867236 - 29867304
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| |||| |||||||||||| |||| || |||||||| ||||||||||||||  ||| ||||||||    
T  29867236 attttattatatggcaaatgaagaaattcggggttgaagattcttggactcaattccttagaattagtt 29867304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 29899374 - 29899442
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||||| ||||| |||||| ||||||| |||||||| || |||||||||||  | ||||||||||    
T  29899374 attttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatttttaaaaattagtt 29899442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 19357906 - 19357981
Alignment:
Q  76 acccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 151  Q
    |||||||| ||| | ||| | |||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||    
T  19357906 acccatttcgttttatggaagatgatggaatttggagttcaagagtcttggactcaattcttaaaaattagttttc 19357981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 20374579 - 20374505
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||| |||||||| || ||| ||||||||||||||||||||| ||| || |||| |||| |  ||||||||||||    
T  20374579 aaactcattttgtaatatgggaaatgaaggaatttggagttggagattcatggattcaactttttaaaattagtt 20374505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 36263053 - 36263119
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattag 146  Q
    |||||||||| ||| | ||| | ||||||||||||||||| |||||||||||| | |||||| ||||    
T  36263053 attttgttatatggaagatggaagaatttggagttgaagagtcttggactcaactcattaaagttag 36263119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 20058128 - 20058059
Alignment:
Q  79 cattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||||||| ||| ||||| |||||||  |||||||||| ||||||  ||||||  ||||||||||||    
T  20058128 cattttgttatatggaaaatggaggaattcagagttgaagagtcttggtgtcaatttcttaaaattagtt 20058059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 18952979 - 18952907
Alignment:
Q  76 acccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||||| | || ||||| ||||||||||||||||||||  | || |||||||| ||  ||||||||||||    
T  18952979 acccattttatcatatggcagatgaaggaatttggagttgacaagtcatggactcagttccttaaaattagtt 18952907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 18983026 - 18982954
Alignment:
Q  76 acccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||||| | || ||||| ||||||||||||||||||||  | || |||||||| ||  ||||||||||||    
T  18983026 acccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtt 18982954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 18997672 - 18997600
Alignment:
Q  76 acccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||||| | || ||||| ||||||||||||||||||||  | || |||||||| ||  ||||||||||||    
T  18997672 acccattttatcatatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagtt 18997600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 19374897 - 19374964
Alignment:
Q  233 tttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttga 301  Q
    ||||||| |||||||||||| || |||| |||| || | ||  ||||||||||||||||||||||||||    
T  19374897 tttctaaaaatggtgatacactgctattggcaaacactataa-agaccaagcaattctctataatttga 19374964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 20133376 - 20133340
Alignment:
Q  91 tggcaaatgaaggaatttggagttgaagaatcttgga 127  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  20133376 tggcaaatgaaagaatttggagttgaagattcttgga 20133340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 20140877 - 20140841
Alignment:
Q  91 tggcaaatgaaggaatttggagttgaagaatcttgga 127  Q
    ||||||||||||||||||||||||||| | |||||||    
T  20140877 tggcaaatgaaggaatttggagttgaaaattcttgga 20140841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 29859454 - 29859522
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||| ||||| ||| | |||||| |||||||||||||||| |||||||| | |||  ||||||||||||    
T  29859454 atttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaattagtt 29859522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 239 - 499
Target Start/End: Original strand, 7619 - 7872
Alignment:
Q  239 agaatggtgatacattgatatttgcaatcaatt-tacgagaccaagcaattctctataatttgaaaaataatagagcaacgaggattaaaagtaccaata 337  Q
    ||||||||||||||||||||||||||| ||||  ||| ||||| ||||||| |||||||||||| | ||||||||| ||  || |||||||||||||||     
T  7619 agaatggtgatacattgatatttgcaaccaatcatac-agacctagcaattgtctataatttgagagataatagagtaaatagaattaaaagtaccaatc 7717  T
Q  338 aaatttggtggtccactgccaagggttatgttgaaagcttggtatcgacttcttgaaagtatgnnnnnnnnctgatgatttacttgtttgaatttgtgct 437  Q
    |||||  ||||| || ||||||||| ||||| |||||||||||| |||||||||||| |||||          ||| |||||||||||||||||| || |    
T  7718 aaattccgtggttcaatgccaagggatatgtagaaagcttggtaccgacttcttgaaggtatgttttgctc--gatcatttacttgtttgaatttttgtt 7815  T
Q  438 agcttgtctatggtacaatgtattttgtgattattttcataccatggttttgatttgattat 499  Q
    || ||||     ||||| ||| || ||||||||||||||||  |||||||||||||||||||    
T  7816 agtttgt-----gtacattgtcttgtgtgattattttcatattatggttttgatttgattat 7872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 7474 - 7529
Alignment:
Q  91 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattag 146  Q
    |||||||||||||||||||||||||| || ||||||  ||||||  ||||||||||    
T  7474 tggcaaatgaaggaatttggagttgatgagtcttgggttcaattccttaaaattag 7529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 53774797 - 53774908
Alignment:
Q  37 ttgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattga 136  Q
    |||||||||||  | ||||| ||||||||||| ||  |||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||      
T  53774797 ttgatggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattcc 53774896  T
Q  137 ttaaaattagtt 148  Q
    ||||||||||||    
T  53774897 ttaaaattagtt 53774908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 8443567 - 8443456
Alignment:
Q  37 ttgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattga 136  Q
    |||||||| || || ||||| |||||||||||||| | ||| |||| |||||||||||| |||||||| ||||||||| | || ||||||| ||||||      
T  8443567 ttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattat 8443468  T
Q  137 ttaaaattagtt 148  Q
    ||||||||||||    
T  8443467 ttaaaattagtt 8443456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 11971058 - 11970984
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||  ||| ||||||||    
T  11971058 aaactcattttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagtt 11970984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 3565737 - 3565812
Alignment:
Q  73 aaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||| ||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  3565737 aaaaccgattttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagtt 3565812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 11981791 - 11981685
Alignment:
Q  42 ggattgcctctgtttatcttatgattt-caacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaa 140  Q
    |||||| || ||||| ||| ||||||| ||||||| | ||||||||||| ||||||||||||||||||||||| ||||| || ||||||| |||  ||||    
T  11981791 ggattgtctttgtttttctcatgattttcaacaaa-ctcattttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaa 11981693  T
Q  141 aattagtt 148  Q
    ||||||||    
T  11981692 aattagtt 11981685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 3557720 - 3557794
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| ||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  3557720 aaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagtt 3557794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 3561066 - 3560960
Alignment:
Q  42 ggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaa 141  Q
    ||||||||| ||||| ||||||  || |||  ||||| ||||| |||||||||| |||||  ||||||| |||||||| ||||||||||||||  |||||    
T  3561066 ggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaa 3560967  T
Q  142 attagtt 148  Q
    |||||||    
T  3560966 attagtt 3560960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 10475164 - 10475239
Alignment:
Q  37 ttgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggag 112  Q
    ||||||||||| || ||||| | |||||||||| | || |||||||||||||| |||||||||||||| |||||||    
T  10475164 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggag 10475239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 10464226 - 10464324
Alignment:
Q  37 ttgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattg 135  Q
    ||||||||||| || ||||| | |||||||||| | || |||||||||||||| |||||||||||||| ||||| | | | || ||||||| |||||||    
T  10464226 ttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatgaaggattttggggatcaggagtcttggattcaattg 10464324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 837769 - 837842
Alignment:
Q  73 aaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattag 146  Q
    ||||||||||||||||| |||||||||||| | ||||| ||| |||| ||||||| ||||||  ||||||||||    
T  837769 aaaacccattttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattag 837842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 53790577 - 53790633
Alignment:
Q  104 aatttggagttgaagaatcttggactcaattgattaaaattagttttccgattcttc 160  Q
    |||||||| ||||| ||||||||||||||||  ||||||||||||||| || |||||    
T  53790577 aatttggatttgaacaatcttggactcaatttcttaaaattagttttcagaatcttc 53790633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 19359160 - 19359203
Alignment:
Q  103 gaatttggagttgaagaatcttggactcaattgattaaaattag 146  Q
    ||||||||||||||||| |||||||||||| | |||||||||||    
T  19359160 gaatttggagttgaagagtcttggactcaacttattaaaattag 19359203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 6372439 - 6372513
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||||||| |||| |||||||||||||| | ||||||| |||| |||| || ||||||   |||||||||||    
T  6372439 aaacccattttattatatggcaaatgaaggattctggagttcaagagtcttagattcaattatataaaattagtt 6372513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 6392835 - 6392892
Alignment:
Q  91 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||||||||| ||||||||| | || ||||||| ||||||  ||||||||||||    
T  6392835 tggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtt 6392892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 1686349 - 1686301
Alignment:
Q  86 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 134  Q
    |||| ||||| |||||||||||||| ||||| || ||||||||||||||    
T  1686349 ttatatggcagatgaaggaatttggcgttgacgagtcttggactcaatt 1686301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 8447767 - 8447659
Alignment:
Q  37 ttgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattga 136  Q
    |||||||| || || ||||| || ||||||||||| | ||| |||  | |||||||||| |||||||| || |||||| | || ||||||| ||||||      
T  8447767 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcattttatttggcagatgaaggatttcggagttcatgagtcttggattcaattat 8447668  T
Q  137 ttaaaatta 145  Q
    |||||||||    
T  8447667 ttaaaatta 8447659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 14514847 - 14514968
Alignment:
Q  27 tctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttgg 126  Q
    ||||||||| || | ||| ||| | ||||| |||||||||||||| ||||||||| ||||||| ||| ||||| | ||||||||||||||||| ||||||    
T  14514847 tctttctgtgttaagggactgcatgtgtttttcttatgatttcaagaaaacccatcttgttatatggaaaatggatgaatttggagttgaagattcttgg 14514946  T
Q  127 actcaattgattaaaattagtt 148  Q
    ||||||||  ||||||||||||    
T  14514947 actcaattccttaaaattagtt 14514968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 20975557 - 20975624
Alignment:
Q  79 cattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattag 146  Q
    ||||||||||| |||||||||| |||||||||||||||||| ||||||| ||||||| ||||| ||||    
T  20975557 cattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaattgtttaaatttag 20975624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 18908885 - 18908808
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 151  Q
    |||||||||||||||| ||| | |||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||    
T  18908885 aaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 18908808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 18920841 - 18920764
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 151  Q
    |||||||||||||||| ||| | |||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||    
T  18920841 aaacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 18920764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 18913632 - 18913556
Alignment:
Q  75 aacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 151  Q
    ||||||||||||||| ||| | |||| ||||||||||||| |||| ||||||||||||||  | |||||||||||||    
T  18913632 aacccattttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaattagttttc 18913556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 25698507 - 25698562
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattg 135  Q
    |||||||||| ||||||||||  ||||||||||||||||| ||||||||| |||||    
T  25698507 attttgttatatggcaaatgagagaatttggagttgaagactcttggactaaattg 25698562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 554471 - 554544
Alignment:
Q  75 aacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||| || |||| ||||||||||  |||| ||||||| |||| ||||||||||||||  ||||||||||||    
T  554471 aacccatcttattatatggcaaatgatagaatatggagttaaagagtcttggactcaattacttaaaattagtt 554544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 25377072 - 25377142
Alignment:
Q  78 ccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||||||| |||   |||||||| ||||||||| |||| ||||||| ||||||  ||||||||||||    
T  25377072 ccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagtt 25377142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 29597637 - 29597551
Alignment:
Q  65 atttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 151  Q
    |||||||  |||| ||||||||||| ||||||||||  ||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  29597637 atttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaacaatcttggactcaattccttaaaattagttttc 29597551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 29647633 - 29647747
Alignment:
Q  37 ttgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattga 136  Q
    |||||||||||||| ||||| ||| |  || | || ||||| ||||||||||| ||||||||||  ||||||||| ||||| ||||||||||||||||      
T  29647633 ttgatggattgcctttgtttttctcaccatcttaagaaaactcattttgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattcc 29647732  T
Q  137 ttaaaattagttttc 151  Q
    |||||||||||||||    
T  29647733 ttaaaattagttttc 29647747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 18964952 - 18964836
Alignment:
Q  28 ctttctgtattgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttgga 127  Q
    |||| |||||||||| ||||||| |||||  || ||||| |  | ||||| |||||  |||| ||||||||||||||||||||||||||||| |||||||    
T  18964952 ctttgtgtattgatgaattgcctttgttttactcatgatcttgaaaaaactcatttcattatatggcaaatgaaggaatttggagttgaagactcttgga 18964853  T
Q  128 ctcaattgattaaaatt 144  Q
    |||||||  ||||||||    
T  18964852 ctcaatttcttaaaatt 18964836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 29642352 - 29642430
Alignment:
Q  73 aaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagttttc 151  Q
    ||||| ||||| ||||| ||||||||||  ||||||||| ||||| ||||||||||||||||  |||||||||||||||    
T  29642352 aaaactcatttcgttatatggcaaatgatagaatttggatttgaacaatcttggactcaattccttaaaattagttttc 29642430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 24330975 - 24330917
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaa 132  Q
    ||||| |||||||||| ||| | |||||||||||||| |||||||| ||||||||||||    
T  24330975 aaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaa 24330917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 29597499 - 29597419
Alignment:
Q  233 tttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagag 313  Q
    ||||| |||||||||| ||||||||||| |||| | || || || || |||||||||| |||||||||||||  |||||||    
T  29597499 tttctgagaatggtgaaacattgatattcgcaagctatgtaggacacaaagcaattctttataatttgaaaacaaatagag 29597419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 23086784 - 23086833
Alignment:
Q  82 tttgttatttggcaaatgaaggaatttggagttgaagaatcttggactca 131  Q
    |||||||| ||||| |||||||| ||||||||| |||| |||||||||||    
T  23086784 tttgttatatggcagatgaaggagtttggagttcaagagtcttggactca 23086833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 29647809 - 29647889
Alignment:
Q  233 tttctaagaatggtgatacattgatatttgcaatcaatttacgagaccaagcaattctctataatttgaaaaataatagag 313  Q
    ||||| |||||||||| ||||||||||| |||| | || ||  | || |||||||||| |||||||||||||  |||||||    
T  29647809 tttctgagaatggtgaaacattgatattcgcaagctatgtagcacacaaagcaattctttataatttgaaaacaaatagag 29647889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 4570927 - 4570995
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||    
T  4570927 attttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaattagtt 4570995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 50645556 - 50645487
Alignment:
Q  79 cattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||||||| |||||||||||||| ||||||||| |||| ||||||| ||||||  ||||||||||||    
T  50645556 cattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagtt 50645487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 10218985 - 10219053
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||| | |||||||||||| |||||||  ||||||| ||||||||||||||  ||||||||||||    
T  10218985 attttgttgtatggcaaatgaagaaatttgggattgaagattcttggactcaattacttaaaattagtt 10219053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 39379131 - 39379063
Alignment:
Q  80 attttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||  ||||||| ||||    
T  39379131 attttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatcagtt 39379063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 15961200 - 15961282
Alignment:
Q  52 tgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 134  Q
    ||||| ||| |||| |||||  |||| ||| | ||||| ||| |||||||| ||||||||| |||||||||||||||||||||    
T  15961200 tgtttttctcatgacttcaaacaaacacatatggttatatggaaaatgaagaaatttggagctgaagaatcttggactcaatt 15961282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 21855459 - 21855401
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaa 132  Q
    ||||| |||||||||| ||| | |||||||||||||| |||||||| ||||||||||||    
T  21855459 aaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaa 21855401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 4015032 - 4014967
Alignment:
Q  83 ttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||||| ||||| |||||| ||||||| |||||||| ||||||||||||||  ||||| ||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagtt 4014967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 4016831 - 4016774
Alignment:
Q  91 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| |||||| |||||||||||||||| || |||||||| ||| ||||| ||||||    
T  4016831 tggcagatgaagaaatttggagttgaagattcctggactcagttgtttaaatttagtt 4016774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 4767 - 4671
Alignment:
Q  52 tgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    ||||| ||| |||||||||| ||||| |||||| |||| |||||||||||| ||||||||||| |||| ||||||||||| ||  | ||||||||||    
T  4767 tgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagtt 4671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 3625740 - 3625802
Alignment:
Q  86 ttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||| |||||||||||| ||||||| |||||||| ||||||||||||||  ||||||||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagtt 3625802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 25901351 - 25901281
Alignment:
Q  78 ccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||||||| ||| |||||||||| ||| ||||| |||| ||||||| ||||||| | ||||||||||    
T  25901351 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 25901281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 25915369 - 25915299
Alignment:
Q  78 ccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||||||| ||| |||||||||| ||| ||||| |||| ||||||| ||||||| | ||||||||||    
T  25915369 ccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagtt 25915299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 3837904 - 3837960
Alignment:
Q  75 aacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactca 131  Q
    ||||||||||||| | ||| ||||||| || ||||||||| |||| |||||||||||    
T  3837904 aacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggactca 3837960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 42846501 - 42846461
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagtt 114  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  42846501 aaacccattttgttatttggcaaatgaaggattttggagtt 42846461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 29390288 - 29390354
Alignment:
Q  82 tttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||||||| ||||| |||| |||||||||||||||||||||||| ||| ||||| || || ||||||    
T  29390288 tttgttatatggcagatgagggaatttggagttgaagaatcttgaactaaattgtttcaatttagtt 29390354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 11339505 - 11339435
Alignment:
Q  64 gatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 134  Q
    ||||||||  |||| || |||||||| ||||||||||  || |||||| || |||||||||||||||||||    
T  11339505 gatttcaaggaaactcaatttgttatatggcaaatgagcgagtttggatttcaagaatcttggactcaatt 11339435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 11345187 - 11345117
Alignment:
Q  64 gatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 134  Q
    ||||||||  |||| || |||||||| ||||||||| | || |||||| || |||||||||||||||||||    
T  11345187 gatttcaaggaaactcaatttgttatatggcaaatggaagagtttggatttcaagaatcttggactcaatt 11345117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 27618485 - 27618559
Alignment:
Q  74 aaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaattagtt 148  Q
    |||| ||||||||||| ||| ||||| | ||| | ||||||||||| ||||||||||| ||| ||||| ||||||    
T  27618485 aaactcattttgttatatggaaaatggaagaactcggagttgaagagtcttggactcagttgcttaaagttagtt 27618559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 11338644 - 11338592
Alignment:
Q  82 tttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaatt 134  Q
    |||||||| ||||||||||| || |||||| || ||||||||||| |||||||    
T  11338644 tttgttatatggcaaatgaaagagtttggatttcaagaatcttggtctcaatt 11338592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 13385 - 13441
Alignment:
Q  75 aacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactca 131  Q
    ||||||||||||| | ||| ||||||| || ||||||||| |||| |||||||||||    
T  13385 aacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggactca 13441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University