View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19665_high_6 (Length: 242)
Name: NF19665_high_6
Description: NF19665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19665_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6954160 - 6953921
Alignment:
| Q |
1 |
atgattatctgtttgattgtctattttgtttcagttcattctttgtatggccaagctcattcatagcaagaacatatagtcgtttcctcttttttattcg |
100 |
Q |
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| T |
6954160 |
atgattatctgtttgattgtctattttgtttcagttcattctttgtatggccaagctcattcatagcaagaacatatagttgtttcctcttttttattcg |
6954061 |
T |
|
| Q |
101 |
ataatcattttgccttaaagttatttactgttgtaattttgagcttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataat |
200 |
Q |
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| T |
6954060 |
ataatcattttgccttaaagttatttactgttgtaattttgagcttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataat |
6953961 |
T |
|
| Q |
201 |
taatagttcaatagtatccatggttagaatgcaccctttg |
240 |
Q |
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| T |
6953960 |
taatagttcaatagtatccatggttagaatgcaccctttg |
6953921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 6952960 - 6952905
Alignment:
| Q |
134 |
taattttgagcttttatgtgtatggtacaatgg--tatagcagccatttttctaag |
187 |
Q |
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| T |
6952960 |
taattttgagcttttatgtgtatggtagaatggtatatagcagccatttttctaag |
6952905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 6934799 - 6934710
Alignment:
| Q |
121 |
ttatttactgttgtaattttgagcttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataattaatagttcaatagtat |
217 |
Q |
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| T |
6934799 |
ttatttactattatagttttgagcttttatgtgtatggtacaatggtat-------aaatttctaagctcatgccaaaattaatagttcagtagtat |
6934710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 6942552 - 6942492
Alignment:
| Q |
180 |
tttctaagctcataccataattaatagttcaatagtatccatggttagaatgcaccctttg |
240 |
Q |
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| T |
6942552 |
tttctaagctcatgacatatttaatagttcaatagcatccattgctagaatgcaccctttg |
6942492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 6947436 - 6947353
Alignment:
| Q |
144 |
cttttatgtgtatggtacaatggtatagcagccatttttctaagctcataccataattaatagttcaatagtatccatggttagaatgcac |
234 |
Q |
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| T |
6947436 |
ctttgatgtgtatggtacaatggtata--ag-----tttctaagctgatgctataattagtagttcaatagtatccattgctagaatgcac |
6947353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 13112216 - 13112252
Alignment:
| Q |
177 |
atttttctaagctcataccataattaatagttcaata |
213 |
Q |
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| T |
13112216 |
atttttctaagcttatgccataattaatagttcaata |
13112252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 15571442 - 15571406
Alignment:
| Q |
121 |
ttatttactgttgtaattttgagcttttatgtgtatg |
157 |
Q |
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| T |
15571442 |
ttatttactgttttaattttgagcttttaagtgtatg |
15571406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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