View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19665_low_1 (Length: 529)
Name: NF19665_low_1
Description: NF19665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19665_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 512
Target Start/End: Original strand, 23859091 - 23859593
Alignment:
| Q |
13 |
aatatgactataatatatcaagagtcccaacatggtacacaagtaagctttagacgcgaaaacatgtaccatgcttccttatcatgccttaaatcatgtg |
112 |
Q |
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| T |
23859091 |
aatatgactataatatatcaagagtcccaacatggtacacaagtaagctttagacgcgaaaacatgtaccatgcttccttatcatgccttaaatcatgtg |
23859190 |
T |
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| Q |
113 |
tagacacccataaagaaacacaatgaatcaaatgtattt--acataa-caaataatcaatgaaattgagcatttttagatttgaacttgtgaaccgaaaa |
209 |
Q |
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| T |
23859191 |
tagacacccataaagaaacacaatgaatcaaatgtatttttacataaacaaataatcaatgaaattgagcatttttagatttgaacttgtgaaccgaaaa |
23859290 |
T |
|
| Q |
210 |
ggcaattgaaagaatatactttatgaaggnnnnnnnngacaatacacacaaggaaagtaacttagatccaacataaagaaaacttcaactccatcgagtg |
309 |
Q |
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| T |
23859291 |
ggcaattgaaagaatatactttatgaaggaaaaaaaagacaatacacacaaggaaagtaacttagatccaacataaagaaaacttcaactccatcgagtg |
23859390 |
T |
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| Q |
310 |
tacaagaaatatgacaagaaacctagaataacaaaaccaagcttaactcaccatgagattctgcaccataaactattccaactgcaccatcataagacta |
409 |
Q |
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| T |
23859391 |
tacaagaaatatgacaagaaacctagaataacaaaaccaagcttaactcaccatgagattctgcaccataaactattccaactgcaccatcataagacta |
23859490 |
T |
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| Q |
410 |
gaagaataaaggaaaaggaaggatattaatttcatttgaggcactattttgacaaaacctgtcaatgtaatatacaaattcttgactttttacatgtcca |
509 |
Q |
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| T |
23859491 |
gaagaataaaggaaaaggaaggatattaatttcatttgaggcactattttgacaaaacctgtcaatgtaatatacaaattcttgactttttacatgtcca |
23859590 |
T |
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| Q |
510 |
tgc |
512 |
Q |
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| T |
23859591 |
tgc |
23859593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 433
Target Start/End: Original strand, 8088071 - 8088150
Alignment:
| Q |
355 |
actcaccatgagattctgcaccataaactattccaactgcaccatcataagactag-aagaataaaggaaaaggaaggat |
433 |
Q |
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| T |
8088071 |
actcaccatgagattctgcaccaggaactaatccaaacccaccatcataagactagaaacaataaaggaaaaagaaggat |
8088150 |
T |
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