View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19665_low_3 (Length: 371)
Name: NF19665_low_3
Description: NF19665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19665_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 44137147 - 44136812
Alignment:
| Q |
19 |
acccttgagtggaccgaggaaatgatgctatgataatctccatgttgtgaagagaatatggaggtgaagtaatcacgaacaagggcgcaaagatcctctt |
118 |
Q |
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| T |
44137147 |
acccttgagtggaccgaggaaatgatgctatgataatctccatgttgtgaagagaatatggaggtgaagtaatcacgaacaagggcgcaaagatcctctt |
44137048 |
T |
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| Q |
119 |
gcgaagtgatccaattacctgaagagtcacgcagttgcttaatagtatttttccttttcctggccgaagcagaggcatggaagaacttgctattagtgtc |
218 |
Q |
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| T |
44137047 |
gcgaagtgatccaattacctgaagagtcacgcagttgcgtaatagtatttttccttttcctggccgaagcagaggcatggaagaacttgctattagtgt- |
44136949 |
T |
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| Q |
219 |
gccgtctgctaaccaatagaccttagaacgttgacgccagtaagtttcctcttgtagaattagagaagcgagatttttctgcatactttccaattgcggg |
318 |
Q |
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| T |
44136948 |
-ccgtctactaaccaatagaccttagaacgttgatgccagtaagtttcctcttgtagaattaaagaagcgagatttttctgcatactttccaattgcggg |
44136850 |
T |
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| Q |
319 |
tcgttaccatcacacatagcattgcggaactcctctat |
356 |
Q |
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| T |
44136849 |
tcgttaccatcacacatagcattgcggaactcttctat |
44136812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 27646231 - 27646348
Alignment:
| Q |
127 |
atccaattacctgaagagtcacgcagttgcttaatagtatttttccttttcctggccgaagcagaggcatggaagaacttgctattagtgtcgccgtctg |
226 |
Q |
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| T |
27646231 |
atccaattgcctgatgggtcacgaagcttttttatagtgtttttcctcttcctggcagatgctgatgcgtggaaaaatttgctgttagtatcgccatcag |
27646330 |
T |
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| Q |
227 |
ctaaccaatagaccttag |
244 |
Q |
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| T |
27646331 |
ctaaccaataaaccttag |
27646348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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