View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19665_low_7 (Length: 236)
Name: NF19665_low_7
Description: NF19665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19665_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 38398531 - 38398754
Alignment:
| Q |
6 |
agtgagaagaacgatttccgcatttatgatgaactataagatcgaatgcggatccacgacaaga---ataagaatgttattgattaggattggttcatcc |
102 |
Q |
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| T |
38398531 |
agtgaaaagcacgatttccgcatttatgatgaactataagatcgaatgcggatccacgacaagaagaataagaatgttattgattagaattggttcatcc |
38398630 |
T |
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| Q |
103 |
aagaaccttgagaagcaaaactaacccccaattcaatccaatattcaatatcaaaactaatgcattaattaaatgaaaaattatcacgacattattattt |
202 |
Q |
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| T |
38398631 |
aagaaccttgagaagcaaaactaacccccaattcaatccaatattcaatatcaaaactaatgcattaattaaatgaaaaattatcacgacattattattt |
38398730 |
T |
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| Q |
203 |
ataacctacacaaatgaagaatat |
226 |
Q |
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| T |
38398731 |
ataacctacacaaatgaagaatat |
38398754 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 15010650 - 15010715
Alignment:
| Q |
11 |
gaagaacgatttccgcatttatgatgaactataagatcgaat-gcggatccacgacaagaataaga |
75 |
Q |
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| T |
15010650 |
gaagaacgatcgccacattcaagatgaactataagatcgaatcgcggatccactacaagaataaga |
15010715 |
T |
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