View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19666_high_3 (Length: 477)
Name: NF19666_high_3
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19666_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 32566581 - 32566128
Alignment:
| Q |
18 |
ttgaacgtatttcctgatatgtttgtgtgatcggtagatacattctggtaaatttaaggagcttttgggcaaacatgagggtactatatacagcgacttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
32566581 |
ttgaacgtatttcctgatatgtttgtgtgatcggtagatacattctgatacatttaaggagcttttgagcaaacatgaggggactatatacagcgacttt |
32566482 |
T |
|
| Q |
118 |
cttattgcaacacaattatttgcaactcttaaacaacataacatctttgcaactactaaaaagggagaaaatctaacaatgaagtggagaaaatatatat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
32566481 |
cttattgcaacacaattatttgcaactcttaaacaacataacatctttgcaactactaaaaagggtgaaaatctaacaatgaagtggagaaaatctatat |
32566382 |
T |
|
| Q |
218 |
aaataatcaatcattattgagattttgacacgggttctttgtaaga-tttgtattctttcatgttcaaattatttttcaaaaaccaagtacactttttca |
316 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32566381 |
aaataatcaatcattatcgagattttgacacgagttctttgtaagattttgtattctttcatgttcaaattatttttcaaaaaccaagtacactttttca |
32566282 |
T |
|
| Q |
317 |
ttgtgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaatatctataagact |
416 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32566281 |
ttgcgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagagcatcctcgagggtccaagagagtacaatatctataagact |
32566182 |
T |
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| Q |
417 |
cccgagtttaagattctcttcacctccatttctagtcttctccatcctttgcta |
470 |
Q |
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| T |
32566181 |
cccgagtttaagattctcttcacttccatttctagtcttctccatcctttgcta |
32566128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 190 - 419
Target Start/End: Original strand, 32648017 - 32648253
Alignment:
| Q |
190 |
ctaacaatgaagtggagaaaatatatataaataatcaatcattattgagattttgacacgggttctttgtaaga-------tttgtattctttcatgttc |
282 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||| | |||||| |||||||||||| |
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| T |
32648017 |
ctaacaatgaagtggagaaaatctatataaacaatcaatcattattgagattttaacaccatttctttgtaacacaatgaatttgtactctttcatgttc |
32648116 |
T |
|
| Q |
283 |
aaattatttttcaaaaaccaagtacactttttcattgtgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcct |
382 |
Q |
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| T |
32648117 |
aaattctttttcaaaaaccaagttcactttttcattgtgagtattgaaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcct |
32648216 |
T |
|
| Q |
383 |
cgagggtccaagagagtacaatatctataagactccc |
419 |
Q |
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| T |
32648217 |
cgagggtccaagaaagtacaatatctataagactccc |
32648253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 311 - 409
Target Start/End: Original strand, 32527666 - 32527763
Alignment:
| Q |
311 |
ttttcattgtgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaatatcta |
409 |
Q |
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||||||||||||||||| ||||| |||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |
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| T |
32527666 |
ttttcattgtgagtgttcaaaagg-tgtaaatgaaaccttgtgtttgtaaagattttcgttgagaacatcctcgaggggccatgagagtacaatatcta |
32527763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 32647834 - 32647940
Alignment:
| Q |
18 |
ttgaacgtatttcctgatatgtttgtgtgatcggtagatacattctggtaaatttaaggagcttttgggcaaacatgagggtactatatacagcgacttt |
117 |
Q |
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| T |
32647834 |
ttgaacgtatctcctgatatgtttgtgtgatcggtacata----------aatttaagaagctttttagtaaacatgatggaactatatacagtgacttt |
32647923 |
T |
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| Q |
118 |
cttattgcaacacaatt |
134 |
Q |
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| T |
32647924 |
cttattgcaacacaatt |
32647940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 32534001 - 32534064
Alignment:
| Q |
340 |
aaagaaaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaa |
403 |
Q |
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| T |
32534001 |
aaagaaaccttgtctttgtaaagattttcgttcaaaacatcctcgtaggtccatgagagtacaa |
32534064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 32516951 - 32517016
Alignment:
| Q |
345 |
aaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaatatctat |
410 |
Q |
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||||| || |||| |||||||||||||||||| |||||| || |||||||||| |||||||||||| |
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| T |
32516951 |
aacctggtatttgaaaagattttcattgagaatatcctctagagtccaagagaatacaatatctat |
32517016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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