View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19666_high_4 (Length: 444)
Name: NF19666_high_4
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19666_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 32174713 - 32175125
Alignment:
| Q |
14 |
atattttagtatgaatgaaacccaaatattaatgatatatttgaagaatgatatataccttattgtatccattatcaaccacgtctttatcttcttctcg |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32174713 |
atattttagtatgaatgaaacccaaagattaatgatatatttgaagaaaaatatataccttattgtatccattatcaaccacgtctttatcttcttctcg |
32174812 |
T |
|
| Q |
114 |
gttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32174813 |
gttctgcaaatttatagtgcaatcaatatcctctatcactagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtaca |
32174912 |
T |
|
| Q |
214 |
tcagtgagatccaagtcatagatatcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaac |
313 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32174913 |
tcagtgagatccaagtcatagatatcatacttgagatagttagccatggcagcaatcaagctagactttccagtacaaggtggaccaaacaacaagtaac |
32175012 |
T |
|
| Q |
314 |
cgcgtttccaagctttccctgttcttctataaaactctccagccctcacaaatttgtccaaatcgttcataatttccctttgaagatcttcatcaatcgc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32175013 |
cgcgtttccaagctttccctgttcttctagaaaactctccagccctcacaaatttgtccaaatcgttcataatttccctttgaagatcttcatcaatcgc |
32175112 |
T |
|
| Q |
414 |
aagagtgttgaaa |
426 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32175113 |
aagagtgttgaaa |
32175125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 32182754 - 32183164
Alignment:
| Q |
16 |
attttagtatgaatgaaacccaaatattaatgatatatttgaagaatgatatataccttattgtatccattatcaaccacgtctttatcttcttctcggt |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||| || ||||| ||||||||||||| |
|
|
| T |
32182754 |
attttagtatgaatgaaactcaaatattaatggtatatttgaagaaaaatatataccttattgtctccattattaacaacttctttctcttcttctcggt |
32182853 |
T |
|
| Q |
116 |
tctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||| ||||||||| |||||| |
|
|
| T |
32182854 |
tctgcaaatttatagtgcaatcaatatcctctatcacaagtatagcacggttggacatgctgagaataagttgcttcaaggtcttattatcccctacatc |
32182953 |
T |
|
| Q |
216 |
agtgagatccaagtcatagatatcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32182954 |
ggtgagatccaagtcatagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccg |
32183053 |
T |
|
| Q |
316 |
cgtttccaagctttccctgttcttctataaaactctccagccctcacaaatttgtccaaatcgttcataatttccctttgaagatcttcatcaatcgcaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||| |||| |
|
|
| T |
32183054 |
cgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttcttcatcaattgcaa |
32183153 |
T |
|
| Q |
416 |
gagtgttgaaa |
426 |
Q |
| |
|
||||||||||| |
|
|
| T |
32183154 |
gagtgttgaaa |
32183164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 32119073 - 32119476
Alignment:
| Q |
17 |
ttttagtatgaatgaaacccaaatattaatgatatatttgaagaatgatatataccttattgtatccattatcaaccacgtctttatcttcttctcggtt |
116 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||||||||| || || |||||||||||| ||||||| || ||||| |||||||||||||| |
|
|
| T |
32119073 |
ttttagtatgaatgaaactcaaagatgaatgatatatttgacgagaaatgcataccttattgtctccatta------acttctttctcttcttctcggtt |
32119166 |
T |
|
| Q |
117 |
ctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatca |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||| | |
|
|
| T |
32119167 |
ctgcaaatttatattgcaatcaatatcctctatcacaagtatagaacgattgggaatgtcaagaataagttgcttcaagctcttattatcctctacatta |
32119266 |
T |
|
| Q |
217 |
gtgagatccaagtcatagatatcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
32119267 |
gtgagatccaagtcatagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgc |
32119366 |
T |
|
| Q |
317 |
gtttccaagctttccctgttcttctataaaactctccagccctcacaaatttgtccaaatcgttcataatttccctttgaagatcttcatcaatcgcaag |
416 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
32119367 |
gtttccaagctttgccggttcttctataaaactctctagcactcacaaatttgtccaaatcattcataatatccctttgaagcccttcatcaattgcaag |
32119466 |
T |
|
| Q |
417 |
agtgttgaaa |
426 |
Q |
| |
|
|||||||||| |
|
|
| T |
32119467 |
agtgttgaaa |
32119476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 68 - 426
Target Start/End: Complemental strand, 32206057 - 32205699
Alignment:
| Q |
68 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgctt |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
32206057 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagtatagaacggtt |
32205958 |
T |
|
| Q |
168 |
gggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcatagatatcatagttgagatagttagccatggcagca |
267 |
Q |
| |
|
|| || |||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
32205957 |
ggacataccaagaataagctgcttcaagatcttattatcttgtacgtcagtgagatccaagtcatagatgtcatagttgagatagttagccatggctgca |
32205858 |
T |
|
| Q |
268 |
atcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctccagccctcacaaatt |
367 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||| | |
|
|
| T |
32205857 |
atcaagctagactttccagtaccaggaggaccgtacaacaagtaaccgcgttgccaagctttccctgttcttctataaaactctttggccttcacaaaat |
32205758 |
T |
|
| Q |
368 |
tgtccaaatcgttcataatttccctttgaagatcttcatcaatcgcaagagtgttgaaa |
426 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
32205757 |
tgtccaaatcattcataatttccctttgaagctcttcatcaattgcaagagtgttgaaa |
32205699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 68 - 426
Target Start/End: Original strand, 32158508 - 32158866
Alignment:
| Q |
68 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgctt |
167 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32158508 |
ataccttattgtatccattatcaacaatttcttcatcttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaagtatagaacgatt |
32158607 |
T |
|
| Q |
168 |
gggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcatagatatcatagttgagatagttagccatggcagca |
267 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32158608 |
ggacatgtcaagaataagttgcttcaagcgcttattatcttgtacattagtgagatctaaatcatagatatcatagttgagatagttagccatggctgca |
32158707 |
T |
|
| Q |
268 |
atcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctccagccctcacaaatt |
367 |
Q |
| |
|
||||| |||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
32158708 |
atcaaactagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagacctcacaaatt |
32158807 |
T |
|
| Q |
368 |
tgtccaaatcgttcataatttccctttgaagatcttcatcaatcgcaagagtgttgaaa |
426 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
32158808 |
tgtccaaatcattcttaatatccctttgaagctcttcatcaattgcaagagtgtcgaaa |
32158866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 32157035 - 32157448
Alignment:
| Q |
16 |
attttagtatgaatgaaacccaaatattaatgatatatttgaagaatgatatataccttat---tgtatccattatcaaccacgtctttatcttcttctc |
112 |
Q |
| |
|
||||||||| ||||||||| |||| ||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| | ||||| |||||||||| |
|
|
| T |
32157035 |
attttagtacgaatgaaactcaaagattaatgatatatttgaagaaaaatatacaccttatcattgtctccattatcaacagcttctttctcttcttctc |
32157134 |
T |
|
| Q |
113 |
ggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||| ||||| ||||||||||||| ||||||||| | ||| |
|
|
| T |
32157135 |
ggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatcgcacggttggacatgctgagaattagttgcttcaagctcttattatcctctac |
32157234 |
T |
|
| Q |
213 |
atcagtgagatccaagtcatagatatcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaa |
312 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||| |
|
|
| T |
32157235 |
atctgtgagatccaagtcatagatatcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggagggccatacaacaagtaa |
32157334 |
T |
|
| Q |
313 |
ccgcgtttccaagctttccctgttcttctataaaactctccagccctcacaaatttgtccaaatcgttcataatttccctttgaagatcttcatcaatcg |
412 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| | |
|
|
| T |
32157335 |
ccgcgtttccaagctttcccggttcttctataaaattcattatccctcacaaatttgtccaaatcattcttaatttccctttgaagctcttcatcaattg |
32157434 |
T |
|
| Q |
413 |
caagagtgttgaaa |
426 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32157435 |
caagagtgttgaaa |
32157448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 68 - 426
Target Start/End: Original strand, 32111096 - 32111454
Alignment:
| Q |
68 |
ataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagaacgctt |
167 |
Q |
| |
|
|||| ||||||| ||||||| ||| || |||| ||||||||||||||| ||||| |||| | ||||||||||||||||||||||||||||||||| || |
|
|
| T |
32111096 |
atacattattgtggccattatgaacaacttcttcatcttcttctcggttttgcaattttacggagcaatcaatatcctctatcacaagtatagaacggtt |
32111195 |
T |
|
| Q |
168 |
gggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcatagatatcatagttgagatagttagccatggcagca |
267 |
Q |
| |
|
|| ||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32111196 |
ggacatgctgagaataagttgcttcaagctcttattatcccctacattagtgagatccaagtcatagatatcatagttgagatagttagccatggctgca |
32111295 |
T |
|
| Q |
268 |
atcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctccagccctcacaaatt |
367 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
32111296 |
atcaagctagactttccagtaccaggagggccatacaacaagtaaccgcgtttccaagctttccctgttcttctataaaattctttagccctcacaaatt |
32111395 |
T |
|
| Q |
368 |
tgtccaaatcgttcataatttccctttgaagatcttcatcaatcgcaagagtgttgaaa |
426 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
32111396 |
tgtccaaatcattcttaatttccctttgaagctcttcatcaattgcaagagtggtgaaa |
32111454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 44 - 426
Target Start/End: Complemental strand, 32211808 - 32211420
Alignment:
| Q |
44 |
aatgatatatttgaagaatgatatataccttattgtatccattatcaaccacgtctttat------cttcttctcggttctgcaaatttatagtgcaatc |
137 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||||||||||||| || |||| || |||||||||||||||||| || ||||||||||| |
|
|
| T |
32211808 |
aatgatatatttaaagaaaaatacataccttattgtatccattatcaacaacttcttcattttcatcttcttctcggttctgcaggttaatagtgcaatc |
32211709 |
T |
|
| Q |
138 |
aatatcctctatcacaagtatagaacgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacatcagtgagatccaagtcatagata |
237 |
Q |
| |
|
||| ||||||||||||||||||||||| |||| || ||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
32211708 |
aatgtcctctatcacaagtatagaacggttggacataccaatgataagttgcttcaagctcttattatcccctacatcagtgagatccaagtcaaagata |
32211609 |
T |
|
| Q |
238 |
tcatagttgagatagttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagctttccctgttc |
337 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
32211608 |
tcatagttgagatagttagccatggctgcaatcaagctagactttccagtaccaggtggaccatacaacaagtaaccgcgttgccaagcttttcctgttc |
32211509 |
T |
|
| Q |
338 |
ttctataaaactctccagccctcacaaatttgtccaaatcgttcataatttccctttgaagatcttcatcaatcgcaagagtgttgaaa |
426 |
Q |
| |
|
|||||||||||||| || | ||||| ||||||||||| ||||||||||||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
32211508 |
ttctataaaactctttggctttgacaaaattgtccaaatcattcataatttcccttcgaagttctatatcaattgcaagagtgttgaaa |
32211420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 68 - 205
Target Start/End: Original strand, 32534305 - 32534448
Alignment:
| Q |
68 |
ataccttattgtatccattatcaaccacgtctttat------cttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtataga |
161 |
Q |
| |
|
||||||||||||||||||||||||| || |||| || |||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
32534305 |
ataccttattgtatccattatcaacaacttcttcattttcatcttcttctcggttctgcaggttaatagtgcaatcaatgtcctctatcacaagtataga |
32534404 |
T |
|
| Q |
162 |
acgcttgggaatgtcaagaataagttgcttcaagcgcttattat |
205 |
Q |
| |
|
||| |||| ||| |||||||||||| | || ||| |||||||| |
|
|
| T |
32534405 |
acggttggacatgccaagaataagtttcctcgagctcttattat |
32534448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 8043902 - 8043829
Alignment:
| Q |
253 |
ttagccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagc |
326 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||| || || |||||| ||||||| ||||| ||||||||||| |
|
|
| T |
8043902 |
ttagccatagcagcaatcaaactagatttcccagttcctggaggaccatacaacaaataaccacgtttccaagc |
8043829 |
T |
|
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 32641166 - 32641242
Alignment:
| Q |
256 |
gccatggcagcaatcaagctagactttccagtaccaggtggaccaaacaacaagtaaccgcgtttccaagctttccc |
332 |
Q |
| |
|
||||| ||||||| ||| ||| ||| ||||| |||||||||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
32641166 |
gccatagcagcaaccaaactactcttcccagttccaggtggaccatacaacaagtaacctctcttccaagctttccc |
32641242 |
T |
|
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