View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19666_high_5 (Length: 419)
Name: NF19666_high_5
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19666_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 8071795 - 8072116
Alignment:
| Q |
9 |
agcacagatgaaagaacaaagaaaacacaaactacttcttcttcggagtggtcaaagagtgaaaaggaagtcgccgaaatcattcttgattttcactgtc |
108 |
Q |
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| T |
8071795 |
agcagagatgaaagaacaaagaaaacacaaactacttcttcttcggagtggtcaaagagtgaaaaggaagtcgccgaaatcattcttgattttcactgtc |
8071894 |
T |
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| Q |
109 |
atgttggtttgttgaatagtataccattcagttggcgttgcaaaagaaagagaaccgaggttaaaaacaacccttctacttctccggcaattcaaaacaa |
208 |
Q |
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| T |
8071895 |
atgttggtttgttgaatagtataccattcagttggcgttgcaaaagaaagagaaccgaggttaaaaacaacccttctacttctccggcaattcaaaacaa |
8071994 |
T |
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| Q |
209 |
ccctgatgttaatgccgccgccggcgatgttgtcaaagttgaggctaccagttctgaaactgaatcagacgatcaactcaagcgacattcaaagaagaaa |
308 |
Q |
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| T |
8071995 |
ccctgatgttaatgccgccgcgggttatgttgtcaaagttgaggctaccagttctgaaactgaatcagacgatcaactcaagcgacattcaaagaagaaa |
8072094 |
T |
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| Q |
309 |
acttctttaaagaaggtatgaa |
330 |
Q |
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| T |
8072095 |
acttctttaaagaaggtatgaa |
8072116 |
T |
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Back To:
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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 54120850 - 54120570
Alignment:
| Q |
19 |
aaagaacaaagaaaacacaaactacttcttcttcggagtggtcaaagagtgaaaaggaagtcgccgaaatcattcttgattttcactgtcatgttggttt |
118 |
Q |
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| T |
54120850 |
aaagcacaatgaaaacagaaacttcttcttctttagagtggtcaaagagcgagatggaagtcgctgaaatcattcttgattttcactgtcatgtcggttt |
54120751 |
T |
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| Q |
119 |
gttgaatagtataccattcagttggcgttgcaaaagaaagagaaccgaggttaaaaacaacccttctacttctccggcaattcaaaacaaccctgatgtt |
218 |
Q |
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| T |
54120750 |
gttaagtagtataccattcagttggggttgcaagagaaaaagaacag---------------cttctccttctccagcaactcaaaactaccgtgctgtt |
54120666 |
T |
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| Q |
219 |
aatgccgccgccggcgatgttgtcaaagttgaggctaccagttctgaaactgaatcagacgatcaactcaagcgacattcaaagaagaaaacttct |
314 |
Q |
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||||| | ||| | |||||||||||||||||| |||||||| |||||||||||||| | ||||||| ||| |||||| |||||| ||||| |
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| T |
54120665 |
aatgctggttccgacacggttgtcaaagttgaggcttgcagttctgcaactgaatcagacgctaaactcaaacgaagttcaaacaagaaaccttct |
54120570 |
T |
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