View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19666_high_6 (Length: 378)
Name: NF19666_high_6
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19666_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 35 - 363
Target Start/End: Complemental strand, 29092397 - 29092071
Alignment:
| Q |
35 |
gtgtttattgggacacttgtctgagttattcaacacacatcgtacattttgtacgttcatcagacatcgatatttgtccgacctgaggacacatctaatc |
134 |
Q |
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| T |
29092397 |
gtgtttattgggacacttgtctgagttattcaacacacatcgtatgttttgtacgttcatcggacatcgatatttgtccgacctgaggacacatctaatc |
29092298 |
T |
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| Q |
135 |
tcagaagtgtgtgtttcatatgttttgtttgcaagtcataatagtatttgaggggtataaagcaaattacttgttgctggtaggacagaacacaatgtca |
234 |
Q |
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| T |
29092297 |
tcagaagtgtgtgttttatatgttttctttgcaagtcataataatatttgaggg--agaaagcaatttacttgttgctggtaggacagaacacaatgtca |
29092200 |
T |
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| Q |
235 |
tattcataagccttgcaagtgaaagtgctggttccatcatcaaatgcatagctataagctcttggacaagctttcttgaaaattgtggaatagaaagaag |
334 |
Q |
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| T |
29092199 |
tattcataagccttgcaagtgaaagtgctggttccatcatcaaatgcatagctataagctcttggacaagctttcttgaaaattgtggaatagaaagaag |
29092100 |
T |
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| Q |
335 |
gttggcatgttgttggattagcatattgt |
363 |
Q |
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| T |
29092099 |
gttggcatgttgttggattagcatattgt |
29092071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 13391190 - 13391142
Alignment:
| Q |
245 |
ccttgcaagtgaaagtgctggttccatcatcaaatgcatagctataagc |
293 |
Q |
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| T |
13391190 |
ccttgcaagcgaaagtgctggtttcatcatcataagcatagctataagc |
13391142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 31945000 - 31945052
Alignment:
| Q |
250 |
caagtgaaagtgctggttccatcatcaaatgcatagctataagctcttggaca |
302 |
Q |
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| T |
31945000 |
caagtgaaggtgctagttccatcatcataagcatagctataagcgcgtggaca |
31945052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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