View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19666_high_9 (Length: 258)
Name: NF19666_high_9
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19666_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 4819067 - 4819286
Alignment:
| Q |
23 |
gaccacattgttcatgaaccgactcttctgataatcgttgatcttgataacttttttctaatattcagaaacttcaaataaaccattatacacgcaaatg |
122 |
Q |
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| T |
4819067 |
gaccacattgttcgtgaaccgactcttctgataatcgttgatcttgataacttgtttctaatattcagaaacttcaaataaaccattatacacgcaaatg |
4819166 |
T |
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| Q |
123 |
taaaccaggttcagtatatctttttggaagcaagaactgctctgaaaccaa--tgcttacattcaagaacttagtctgattcatgtgtaggtgcttacat |
220 |
Q |
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| T |
4819167 |
taaaccaggttcagtatatctttttggaagcaagaac--cgctgaaaccaatgtgcttgcattcaagaacttagtctgattcatgtgtcggtgcttacat |
4819264 |
T |
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| Q |
221 |
ttcattgattgatgaagttctt |
242 |
Q |
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||||||||| |||||||||||| |
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| T |
4819265 |
ttcattgatagatgaagttctt |
4819286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 4806155 - 4806268
Alignment:
| Q |
45 |
ctcttctgataatcgttgatcttgataacttttttctaatattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctt |
144 |
Q |
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| T |
4806155 |
ctcttctaataatcgttgatcttcataacttatttccaatattcagcaacttctggtaaatcattacacacacaaatgaaaaccaggtt-aatatatctt |
4806253 |
T |
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| Q |
145 |
tttggaagcaagaac |
159 |
Q |
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| T |
4806254 |
ttcggaagaaagaac |
4806268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 4824140 - 4824218
Alignment:
| Q |
77 |
tttctaatattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaa |
155 |
Q |
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|||| |||||||||||||||| |||| ||| | || | ||||||||||||||||||| |||||| |||||||||||| |
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| T |
4824140 |
tttccaatattcagaaacttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaa |
4824218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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