View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19666_low_14 (Length: 246)
Name: NF19666_low_14
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19666_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27416100 - 27415873
Alignment:
| Q |
1 |
gctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtg |
100 |
Q |
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| T |
27416100 |
gctcaattcctgctttgaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttctgaagtg |
27416001 |
T |
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| Q |
101 |
caataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatttcaatctaatggtc |
200 |
Q |
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| T |
27416000 |
caataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatatacgctatataaagaatttcaatctaatggtc |
27415901 |
T |
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| Q |
201 |
ttttttcccatctttacaatttgataac |
228 |
Q |
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| T |
27415900 |
ttttttcccatctttacaatttgataac |
27415873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 27413115 - 27412989
Alignment:
| Q |
24 |
ttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagagga |
123 |
Q |
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| T |
27413115 |
ttcagaataccaagtcattttttaa-ttatagcaagcaatattactcatatagtcctatttcttaagtttctaagtgcaataaaccaaaaacatagaaga |
27413017 |
T |
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| Q |
124 |
gctgcttgagtagtcgaattcgttttca |
151 |
Q |
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| T |
27413016 |
gttacttgaatagtcgaattcgttttca |
27412989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 27569734 - 27569880
Alignment:
| Q |
17 |
gaaatttttcagaatgccaattcattttttgtcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaag |
116 |
Q |
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| T |
27569734 |
gaaatttctcaggataccaagtccctttttttcttatagcaagcaatgttacttatataatcatatgcagtatgttcttaagtgcaataaaccaaaaaca |
27569833 |
T |
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| Q |
117 |
tagaggagctgcttgagtagtcgaattcgttttcactaaacaaaata |
163 |
Q |
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| T |
27569834 |
gagaggagatatttgagtagtcgaattcattgtcattaaacaaaata |
27569880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 27423642 - 27423546
Alignment:
| Q |
48 |
tcttatagcaagcagaattactcatataatcgaattttgtaagttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattc |
144 |
Q |
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| T |
27423642 |
tcttatagcaagcaacattactcatatagtcatatttcataagtttttaagtgcaataaaccaaaaacacaaaggagatgtttgagtagtcgaattc |
27423546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 162
Target Start/End: Original strand, 27565711 - 27565782
Alignment:
| Q |
91 |
ttcttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaat |
162 |
Q |
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| T |
27565711 |
ttcttaagtgcaataaaccaaaaacatagaagagctgcttgaatagtcgaattcattgtcgttaaacaaaat |
27565782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 27426187 - 27426120
Alignment:
| Q |
94 |
ttaagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaa |
161 |
Q |
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| T |
27426187 |
ttaagtgcgataaaccaaaaacgtaaaagagctgcttgagtagttgaattcattctcattaaacaaaa |
27426120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 27420748 - 27420676
Alignment:
| Q |
96 |
aagtgcaataaaccaaaaaagtagaggagctgcttgagtagtcgaattcgttttcactaaacaaaataatatata |
170 |
Q |
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| T |
27420748 |
aagtgcaataaacataaaca-tagaggatcagcttgagtagtcgaattcgttttcattaaacaaaa-aatatata |
27420676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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