View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19666_low_17 (Length: 231)
Name: NF19666_low_17
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19666_low_17 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 11661977 - 11661781
Alignment:
| Q |
18 |
atgagaatagaaaacatccacaaccatgctcttggcagttgttttatctgaagacttatagttaaacttacaaacaaccatgttgatccatgaaagagtt |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11661977 |
atgagaatagaaaacatccaaaaccatgctcttggcagttgttttatctgaagacttatagttaaacttacaaacaaccatgttgatccatgaaagagtt |
11661878 |
T |
|
| Q |
118 |
cgagcaaccaccaattaagaggaaatgcgtcgtggtttttccttatattctcttctaatacccaaattcctaaacataaatgcaacaacccaagaga |
214 |
Q |
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| T |
11661877 |
cgagcaaccaccaattaagaggaaatgcgtcgtggtttttccttatattctcttctaatacccaaattcctaaacataaatgcaaaaacccaagaga |
11661781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 11711597 - 11711788
Alignment:
| Q |
23 |
aatagaaaacatccacaaccatgctcttggcagttgttttatctgaagacttatagttaaacttacaaacaaccatgttgatccatgaaagagttcgagc |
122 |
Q |
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||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
11711597 |
aatagaaaacagtaacaaccatgctcgtggaagttgttttatccgaagacttatagttaaacttacaaacaaccatgttgaaccgtgaaagagttcgagt |
11711696 |
T |
|
| Q |
123 |
aaccaccaattaagaggaaatgcgtcgtggtttttccttatattctcttctaatacccaaattcctaaacataaatgcaacaacccaagaga |
214 |
Q |
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| T |
11711697 |
aaccaccaattaataggaaaggcattgtggtttttccttatcttttgttctaagtccctaattcctaagcataaatgcaagaaaccaagaga |
11711788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 11633076 - 11633264
Alignment:
| Q |
20 |
gagaatagaaaacatccacaaccatgctcttggcagttgttttatctgaagacttatagttaaacttacaaacaaccatgttgatccatgaaagagttcg |
119 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||| |||||||||| ||||||||||||||| |
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| T |
11633076 |
gagaacagaaaacatccacaaccatgctcttgagagttgttttatccgaagacttatagataaacttatcgacaaccatgtgagtccatgaaagagttct |
11633175 |
T |
|
| Q |
120 |
agcaaccaccaattaagaggaaatgcgtcgtggtttttccttatattctcttctaatacccaaattcctaaacataaatgcaacaaccc |
208 |
Q |
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| T |
11633176 |
agcaaccaccaattaagaggaaagacttcatggtttttccttaacttctcctctaaaatccaaactcctaaggataaatgcaacaaccc |
11633264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 11617153 - 11616974
Alignment:
| Q |
26 |
agaaaacatccacaaccatgctcttggcagttgttttatctgaagacttatagttaaacttacaaacaaccatgttgatccatgaaagagttcgagcaac |
125 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||| || | || |||||||| ||||||||||| | |||||||||||||| |||||| |
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| T |
11617153 |
agaaaacatccacaaccatgctcttgtaagttgtttcatctgaaggctgacagataaacttatcgacaaccatgttaaaccatgaaagagttctagcaac |
11617054 |
T |
|
| Q |
126 |
caccaattaagaggaaatgcgtcgtggtttttccttatattctcttctaatacccaaattcctaaacataaatgcaacaa |
205 |
Q |
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|||||||||||||| || | || ||||||||||||| ||||| ||||| | ||||| |||||| ||||||||||||| |
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| T |
11617053 |
caccaattaagagggaagacttcatggtttttccttaacttctcctctaaaatccaaactcctaaggataaatgcaacaa |
11616974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 10008 - 10116
Alignment:
| Q |
12 |
aagaaaatgagaatagaaaacatccacaaccatgctcttggcagttgttttatctgaagacttatagttaaacttacaaacaaccatgttgatccatgaa |
111 |
Q |
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||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| ||||||||||| ||||||||| |
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| T |
10008 |
aagaacatgaaaaaagaaaacatccacaaccatgctcttgtgagttgttttatctgaagacttacaattaaacttactaacaaccatgtgaatccatgaa |
10107 |
T |
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| Q |
112 |
agagttcga |
120 |
Q |
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|||| |||| |
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| T |
10108 |
agagatcga |
10116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 41648218 - 41648302
Alignment:
| Q |
13 |
agaaaatgagaatagaaaacatccacaaccatgctcttggcagttgttttatctgaagacttatagttaaacttacaaacaacca |
97 |
Q |
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|||| |||| || |||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||||| |||||||| |
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| T |
41648218 |
agaatatgaaaacagaaaacatccacaaccatgttcttgttagttgttttatctgaagacttacaattaaacttactaacaacca |
41648302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 11495 - 11386
Alignment:
| Q |
33 |
atccacaaccatgctcttggcagttgttttatctgaagacttatagttaaacttacaaacaaccatgttgatccatgaaagagttcgagcaaccaccaat |
132 |
Q |
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|||||||| |||||||| | ||||||||| |||||| |||| |||||||||||| |||||||||| | |||||||||| ||| ||||||||| | |
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| T |
11495 |
atccacaaacatgctctcgagggttgttttagctgaaggcttacagttaaacttactgacaaccatgtgaagccatgaaagatttctagcaaccactcct |
11396 |
T |
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| Q |
133 |
taagaggaaa |
142 |
Q |
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|||||||||| |
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| T |
11395 |
taagaggaaa |
11386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 44810565 - 44810365
Alignment:
| Q |
12 |
aagaaaatgagaatagaaaacatccacaaccatgctcttggcagttgttttatctgaagacttatagttaaacttacaaacaaccatgttgatccatgaa |
111 |
Q |
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||||| || ||||||||||| | || |||||||||||||| |||||||| | || |||||||| ||||||| || || ||||||||| |||| |||| |
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| T |
44810565 |
aagaagattagaatagaaaaaagccttaaccatgctcttggaagttgtttaaacttaagacttaatgttaaaccaactaataaccatgttaatccctgaa |
44810466 |
T |
|
| Q |
112 |
agagttcgagcaaccaccaattaagaggaaatgcgtcgtggtttttccttatattctcttctaatacccaaattcctaaacataaatgcaacaacccaag |
211 |
Q |
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| | ||| ||||||||| ||| |||||| | ||| |||||||||| | |||||||| || | |||||| || || ||||||||| ||||||||| |
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| T |
44810465 |
ataattccagcaaccacaaatcaagaggcagtgcagttcggtttttcctcaacttctcttcaaaaatccaaatgccaaagaataaatgcaccaacccaag |
44810366 |
T |
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| Q |
212 |
a |
212 |
Q |
| |
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| |
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|
| T |
44810365 |
a |
44810365 |
T |
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