View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19666_low_18 (Length: 230)

Name: NF19666_low_18
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19666_low_18
NF19666_low_18
[»] chr7 (8 HSPs)
chr7 (12-197)||(40589639-40589824)
chr7 (156-214)||(40589791-40589849)
chr7 (11-66)||(43181237-43181292)
chr7 (11-66)||(43181306-43181361)
chr7 (166-214)||(43181223-43181271)
chr7 (166-214)||(43181292-43181340)
chr7 (166-214)||(43181361-43181409)
chr7 (11-57)||(43181375-43181421)
[»] scaffold0177 (7 HSPs)
scaffold0177 (12-214)||(21754-21955)
scaffold0177 (12-214)||(21922-22124)
scaffold0177 (12-169)||(21630-21787)
scaffold0177 (36-214)||(22835-23012)
scaffold0177 (60-170)||(21442-21552)
scaffold0177 (138-214)||(22091-22167)
scaffold0177 (12-66)||(22814-22868)
[»] chr6 (3 HSPs)
chr6 (12-186)||(27901531-27901704)
chr6 (51-197)||(19284438-19284584)
chr6 (156-214)||(27901671-27901729)
[»] chr2 (5 HSPs)
chr2 (12-214)||(33866440-33866641)
chr2 (12-214)||(33866272-33866473)
chr2 (12-212)||(33866104-33866303)
chr2 (12-76)||(33866608-33866672)
chr2 (102-214)||(33866026-33866137)
[»] scaffold0320 (2 HSPs)
scaffold0320 (42-211)||(1-183)
scaffold0320 (12-58)||(153-199)
[»] scaffold1425 (3 HSPs)
scaffold1425 (42-175)||(1-134)
scaffold1425 (12-109)||(1735-1832)
scaffold1425 (166-214)||(1720-1768)
[»] chr3 (1 HSPs)
chr3 (40-196)||(2941043-2941198)
[»] scaffold0585 (1 HSPs)
scaffold0585 (102-193)||(1590-1681)
[»] chr8 (6 HSPs)
chr8 (40-174)||(22651306-22651439)
chr8 (12-92)||(24632608-24632689)
chr8 (12-73)||(24632115-24632176)
chr8 (151-214)||(24632656-24632719)
chr8 (24-92)||(24632276-24632345)
chr8 (178-214)||(24632143-24632179)
[»] scaffold0036 (4 HSPs)
scaffold0036 (104-163)||(93246-93305)
scaffold0036 (104-163)||(93305-93364)
scaffold0036 (104-148)||(93364-93408)
scaffold0036 (130-163)||(93213-93246)
[»] chr1 (2 HSPs)
chr1 (12-73)||(33036760-33036821)
chr1 (12-73)||(33036852-33036913)
[»] chr4 (3 HSPs)
chr4 (158-205)||(15983840-15983887)
chr4 (158-205)||(15983907-15983954)
chr4 (158-205)||(15983974-15984021)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 40589824 - 40589639
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgac 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| || ||||||||||||||    
T  40589824 taatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagtacgtctccaaatgaggaacctttggtgac 40589725  T
Q  112 caaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatga 197  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  40589724 caaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgtaatactaattttatga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 40589849 - 40589791
Alignment:
Q  156 cctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaatt 214  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40589849 cctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaatt 40589791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 43181237 - 43181292
Alignment:
Q  11 ataatactaattttatgatgattacggacctaattaacaagttacttccctaaaat 66  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  43181237 ataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 43181306 - 43181361
Alignment:
Q  11 ataatactaattttatgatgattacggacctaattaacaagttacttccctaaaat 66  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  43181306 ataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 43181223 - 43181271
Alignment:
Q  166 ttcattctagatatgtaatactaattttatgatgattatggacctaatt 214  Q
    |||||||||| ||| |||||||||||||||||||||||| |||| ||||    
T  43181223 ttcattctagttatataatactaattttatgatgattatagaccaaatt 43181271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 43181292 - 43181340
Alignment:
Q  166 ttcattctagatatgtaatactaattttatgatgattatggacctaatt 214  Q
    |||||||||| ||| |||||||||||||||||||||||| |||| ||||    
T  43181292 ttcattctagttatataatactaattttatgatgattatagaccaaatt 43181340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 43181361 - 43181409
Alignment:
Q  166 ttcattctagatatgtaatactaattttatgatgattatggacctaatt 214  Q
    |||||||||| ||| |||||||||||||||||||||||| |||| ||||    
T  43181361 ttcattctagttatataatactaattttatgatgattatagaccaaatt 43181409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 43181375 - 43181421
Alignment:
Q  11 ataatactaattttatgatgattacggacctaattaacaagttactt 57  Q
    ||||||||||||||||||||||||  |||| |||||| |||||||||    
T  43181375 ataatactaattttatgatgattatagaccaaattaataagttactt 43181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 139; Significance: 7e-73; HSPs: 7)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 21955 - 21754
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgac 111  Q
    |||||||| |||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  21955 taatactacttttatgatgattatggaccaaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcgaaaggaggaacctttggtgac 21856  T
Q  112 caaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggaccta 211  Q
    |||||||| |||| | ||| ||||| ||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  21855 caaaattt-atcctaccttctttggcttggattcttgccaaatgcctaatatagttcattctagttttgtaatactaattttatgatgattatggaccta 21757  T
Q  212 att 214  Q
    |||    
T  21756 att 21754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 22124 - 21922
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgac 111  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||| |||||| || ||||||||||||| |||||| ||||| ||||||||||||||    
T  22124 taatactaattttatgatgattatgaacctaattaacaagttacttccttaaaataaaatttaaattaagtttgtctcccaaggaggaacctttggtgac 22025  T
Q  112 caaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggaccta 211  Q
    |||||||||||  || ||||| ||| ||| ||||||||||||| ||||||||| ||||||||||  ||||||||||| |||||||||||||||||||| |    
T  22024 caaaatttaatatgaacttttatggcttgaattcttgccaaatgcctaatataattcattctagtaatgtaatactacttttatgatgattatggaccaa 21925  T
Q  212 att 214  Q
    |||    
T  21924 att 21922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 21787 - 21630
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgac 111  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  21787 taatactaattttatgatgattatggacctaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcccaaggaggaacctttggtgac 21688  T
Q  112 caaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttca 169  Q
    ||||||||||||||| ||| | ||| ||| ||||||||||||| ||||||||||||||    
T  21687 caaaatttaatccgaacttgtatggcttgaattcttgccaaatgcctaatatagttca 21630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 23012 - 22835
Alignment:
Q  36 ggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgaccaaaatttaatccgatcttttttg 135  Q
    ||||||||||||||| ||| || || ||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||||| ||| | ||||||||    
T  23012 ggacctaattaacaacttaatttccgaaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtgaccaaaattta-tcctaccttttttg 22914  T
Q  136 gtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaatt 214  Q
    | ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  22913 gcttggattcttgtcaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatggacataatt 22835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 170
Target Start/End: Complemental strand, 21552 - 21442
Alignment:
Q  60 ctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgaccaaaatttaatccgatcttttttggtttggattcttgccaaattccta 159  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||| ||||    
T  21552 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaataccta 21453  T
Q  160 atatagttcat 170  Q
    |||||||||||    
T  21452 atatagttcat 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 22167 - 22091
Alignment:
Q  138 ttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaatt 214  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  22167 ttggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatgaacctaatt 22091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 22868 - 22814
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaat 66  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  22868 taatactaattttatgatgattatggacataattaacaagttacttccctaaaat 22814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 27901704 - 27901531
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgac 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| || ||    
T  27901704 taatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttcgtaac 27901605  T
Q  112 caaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatac 186  Q
    |||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27901604 caaaattt-atcctaccttttttggcttggattcttgccaaattcctaatatagttcattctagttatgtaatac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 19284584 - 19284438
Alignment:
Q  51 gttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgaccaaaatttaatccgatcttttttggtttggattcttgcc 150  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  19284584 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgcc 19284485  T
Q  151 aaattcctaatatagttcattctagatatgtaatactaattttatga 197  Q
    ||||||| | ||||||||||||||| |||||||||||| ||||||||    
T  19284484 aaattccgattatagttcattctagttatgtaatactatttttatga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 27901729 - 27901671
Alignment:
Q  156 cctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaatt 214  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  27901729 cctaatatagttcattctagttatttaatactaattttatgatgattatggacctaatt 27901671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 33866440 - 33866641
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgac 111  Q
    ||||||| ||| ||||||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  33866440 taatactcattgtatgatgattatggacctaattaacaagtttctttcctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgac 33866539  T
Q  112 caaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggaccta 211  Q
    |||||||| |||| | | ||||||| || ||||||| ||||||  ||  ||||||||||||||  ||||||||||| ||| |||||||||||||||||||    
T  33866540 caaaattttatccta-cctttttggcttcgattctttccaaatgtctgctatagttcattctatttatgtaatactcattgtatgatgattatggaccta 33866638  T
Q  212 att 214  Q
    |||    
T  33866639 att 33866641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 33866272 - 33866473
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgac 111  Q
    ||||||||||| ||||||||||| |||||||| ||||||||| |||||||||||| |  |||||||||||||||||||||||||| |||| | |||||||    
T  33866272 taatactaattctatgatgattatggacctaaataacaagtttcttccctaaaataatttttaaattaagttcgtctccaaaggaggaacttctggtgac 33866371  T
Q  112 caaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggaccta 211  Q
    |||||||| |||| | | ||||||| |||||||||||| ||||  ||  ||||||||||||||  ||||||||||| ||| |||||||||||||||||||    
T  33866372 caaaattttatccta-cctttttggcttggattcttgctaaatgtctgctatagttcattctatttatgtaatactcattgtatgatgattatggaccta 33866470  T
Q  212 att 214  Q
    |||    
T  33866471 att 33866473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 33866104 - 33866303
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgac 111  Q
    ||||||| ||| | ||||||||| ||||| ||||||||||||  ||| ||||||| ||||  ||||||||||||||||||||||| ||||||||||||||    
T  33866104 taatactcattgtttgatgattatggacccaattaacaagttttttctctaaaataaagtacaaattaagttcgtctccaaaggaggaacctttggtgac 33866203  T
Q  112 caaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggaccta 211  Q
    |||||||| |||| | | ||||||| || |||||||||||||| | |  ||||||||||||||  ||||||||||||||| |||||||||||||||||||    
T  33866204 caaaattttatcctaac-tttttggctttgattcttgccaaatgcttgctatagttcattctatttatgtaatactaattctatgatgattatggaccta 33866302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 33866608 - 33866672
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaa 76  Q
    ||||||| ||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||||    
T  33866608 taatactcattgtatgatgattatggacctaattaacaagtttcttccctaaaataaagtttaaa 33866672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 33866026 - 33866137
Alignment:
Q  102 ctttggtgaccaaaatttaatccgat-cttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatgatga 200  Q
    |||||||||||||||||| ||  ||| | ||||||  ||||||||||| |||||  ||  ||||||||||||||  ||||||||||| ||| | ||||||    
T  33866026 ctttggtgaccaaaattttat--gatacctttttgacttggattcttgtcaaatgtctgctatagttcattctatttatgtaatactcattgtttgatga 33866123  T
Q  201 ttatggacctaatt 214  Q
    ||||||||| ||||    
T  33866124 ttatggacccaatt 33866137  T

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Target: scaffold0320 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 1 - 183
Alignment:
Q  42 aattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgaccaaaatttaatccgatcttttttggtttgg 141  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||    
T  1 aattaacaagttacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  142 attcttgcc-------------aaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggaccta 211  Q
    |||||||||             |||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  101 attcttgccaaatgcctaatataaatgcctaatatagatcattctagttatgtaatactaattttatgatgattatggaccta 183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 153 - 199
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttc 58  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||    
T  153 taatactaattttatgatgattatggacctatttaacaagttacttc 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 1 - 134
Alignment:
Q  42 aattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgaccaaaatttaatccgatcttttttggtttgg 141  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  1 aattaacaagttacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  142 attcttgccaaattcctaatatagttcattctag 175  Q
    ||||||||| ||| ||||||||||||||||||||    
T  101 attcttgcctaatgcctaatatagttcattctag 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 1735 - 1832
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtg 109  Q
    |||||||||| ||||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  1735 taatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtg 1832  T

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Target: scaffold1425; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 1720 - 1768
Alignment:
Q  166 ttcattctagatatgtaatactaattttatgatgattatggacctaatt 214  Q
    |||||||||| ||| |||||||||| ||||||||||||| |||||||||    
T  1720 ttcattctagttatttaatactaatgttatgatgattatcgacctaatt 1768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 2941198 - 2941043
Alignment:
Q  40 ctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgaccaaaatttaatccgatcttttttggttt 139  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||| | ||||||||| ||    
T  2941198 ctaattaagaagttacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtgaccaaaattt-atcctaccttttttggatt 2941100  T
Q  140 ggattcttgccaaattcctaatatagttcattctagatatgtaatactaattttatg 196  Q
    |||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||    
T  2941099 ggattcttaccaaatgcctaatatagttcattctggttatgtaatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
Q  102 ctttggtgaccaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatatagttcattctagatatgtaatactaatttt 193  Q
    ||||||||||||||||||||||| | |||||||||||| |||||||||| ||| |||||||||||||||||||| ||| |||||||||||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 174
Target Start/End: Complemental strand, 22651439 - 22651306
Alignment:
Q  40 ctaattaacaagttacttccctaaaatcaagtttaaattaagttcgtctccaaaggaagaacctttggtgaccaaaatttaatccgatcttttttggttt 139  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||| ||| ||||| || ||||| ||||| || | ||||||| | ||    
T  22651439 ctaattaacaagttactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttgttgtccaaactttaa-ccaaccttttttagctt 22651341  T
Q  140 ggattcttgccaaattcctaatatagttcattcta 174  Q
    ||||||||||||| | |||| | ||||||||||||    
T  22651340 ggattcttgccaagtgcctactctagttcattcta 22651306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 24632689 - 24632608
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaag-tttaaattaagttcgtctccaa 92  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||    
T  24632689 taatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgagttcgtctccaa 24632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 24632176 - 24632115
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagttt 73  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  24632176 taatacttattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 24632115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 24632719 - 24632656
Alignment:
Q  151 aaattcctaatatagttcattctagatatgtaatactaattttatgatgattatggacctaatt 214  Q
    |||| |||| ||||||||||| ||   |||||||||| ||||||||||||||||||||||||||    
T  24632719 aaatgcctactatagttcattatattgatgtaatactcattttatgatgattatggacctaatt 24632656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 24632345 - 24632276
Alignment:
Q  24 tatgatgattacggacctaattaacaagttacttccctaaaatcaagt-ttaaattaagttcgtctccaa 92  Q
    |||||| |||| |||| ||||||||| |||||||||||||||| ||||  |||||| |||||||||||||    
T  24632345 tatgatcattatggacttaattaacatgttacttccctaaaattaagtactaaattgagttcgtctccaa 24632276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 24632179 - 24632143
Alignment:
Q  178 atgtaatactaattttatgatgattatggacctaatt 214  Q
    |||||||||| ||||||||||||||||||||||||||    
T  24632179 atgtaatacttattttatgatgattatggacctaatt 24632143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 93246 - 93305
Alignment:
Q  104 ttggtgaccaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatat 163  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  93246 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat 93305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 93305 - 93364
Alignment:
Q  104 ttggtgaccaaaatttaatccgatcttttttggtttggattcttgccaaattcctaatat 163  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  93305 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaattcctaatat 93364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 93364 - 93408
Alignment:
Q  104 ttggtgaccaaaatttaatccgatcttttttggtttggattcttg 148  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  93364 ttggtgaccaaaatttaatccaaacttttttggtttggattcttg 93408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 93213 - 93246
Alignment:
Q  130 tttttggtttggattcttgccaaattcctaatat 163  Q
    ||||||||||||||||||| ||||||||||||||    
T  93213 tttttggtttggattcttgtcaaattcctaatat 93246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 33036760 - 33036821
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagttt 73  Q
    ||||||| |||||||||||||||  |||| ||||||||||||||||||||||||| ||||||    
T  33036760 taatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 33036852 - 33036913
Alignment:
Q  12 taatactaattttatgatgattacggacctaattaacaagttacttccctaaaatcaagttt 73  Q
    ||||||| |||||||||||||||  |||| ||||||||||||||||||||||||| ||||||    
T  33036852 taatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 15983840 - 15983887
Alignment:
Q  158 taatatagttcattctagatatgtaatactaattttatgatgattatg 205  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15983840 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 15983907 - 15983954
Alignment:
Q  158 taatatagttcattctagatatgtaatactaattttatgatgattatg 205  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15983907 taatattgttcattctagttatgtaatactaattttatgatgattatg 15983954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 15983974 - 15984021
Alignment:
Q  158 taatatagttcattctagatatgtaatactaattttatgatgattatg 205  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  15983974 taatattgttcattctagttatgtaatactaattttatgatgattatg 15984021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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