View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19666_low_19 (Length: 227)
Name: NF19666_low_19
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19666_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 48404237 - 48404428
Alignment:
| Q |
19 |
tctgcactctgtctaattttctgaagtgaatattctttccttcttgactgctcgtaaccaaaatttctcaagcattataaaagaatccaagagataaaaa |
118 |
Q |
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| T |
48404237 |
tctgcactctgtctaattttctgaagtgaatattctttccttcttgactgctcgtaaccaaaatttctcaagcattataaaagaatccaagagataaaaa |
48404336 |
T |
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| Q |
119 |
tttcatcaacatagcaatttcatcaatgtagtttggattcttaccacagtaacaaggtcggcagctaattcataatatcgatcagtaatctc |
210 |
Q |
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| T |
48404337 |
tttcatcaacatagcaatttcatcaatgtagtttggattcttaccacaataacaaggtcggcagctaattcataatatcgatcagtaatctc |
48404428 |
T |
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Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 207
Target Start/End: Complemental strand, 42831010 - 42830824
Alignment:
| Q |
21 |
tgcactctgtctaattttctgaagtgaatattctttccttcttgactgctcgtaaccaaaatttctcaagcattataaaagaatccaagagataaaaatt |
120 |
Q |
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||||||||||||||||||||| |||||| ||||| |||||||||||| ||| ||||||||||||| ||||||||| | ||||||||||||||||||||| |
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| T |
42831010 |
tgcactctgtctaattttctgtagtgaagattctgtccttcttgactactcacaaccaaaatttcttaagcattatcagagaatccaagagataaaaatt |
42830911 |
T |
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| Q |
121 |
tcatcaacatagcaatttcatcaatgtagtttggattcttaccacagtaacaaggtcggcagctaattcataatatcgatcagtaat |
207 |
Q |
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|||| ||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| |
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| T |
42830910 |
tcattaacatagtaattttatcaaagtagtttggattcttaccgtagtaacaaggtcggcagctaattcataataacggtcagtaat |
42830824 |
T |
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