View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19666_low_2 (Length: 524)

Name: NF19666_low_2
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19666_low_2
NF19666_low_2
[»] chr7 (11 HSPs)
chr7 (19-520)||(41760198-41760699)
chr7 (231-321)||(37928265-37928355)
chr7 (233-324)||(23142707-23142799)
chr7 (264-318)||(11736227-11736281)
chr7 (287-321)||(18221174-18221208)
chr7 (264-324)||(16685729-16685790)
chr7 (264-324)||(17659965-17660026)
chr7 (264-324)||(3624279-3624339)
chr7 (287-318)||(1703935-1703966)
chr7 (263-318)||(7833805-7833860)
chr7 (233-324)||(45907089-45907179)
[»] chr5 (3 HSPs)
chr5 (235-324)||(7319227-7319316)
chr5 (286-324)||(14044735-14044773)
chr5 (263-303)||(8435054-8435094)
[»] chr4 (5 HSPs)
chr4 (236-324)||(20775042-20775130)
chr4 (280-324)||(31152188-31152232)
chr4 (263-324)||(27284069-27284130)
chr4 (263-324)||(52837322-52837383)
chr4 (264-324)||(31647720-31647779)
[»] chr8 (3 HSPs)
chr8 (262-365)||(3137396-3137499)
chr8 (262-318)||(24757109-24757165)
chr8 (269-321)||(44648996-44649048)
[»] chr3 (6 HSPs)
chr3 (235-324)||(24344800-24344889)
chr3 (234-324)||(36436552-36436642)
chr3 (232-321)||(48338779-48338868)
chr3 (231-321)||(49543170-49543260)
chr3 (263-318)||(635766-635821)
chr3 (264-324)||(53818824-53818884)
[»] chr6 (2 HSPs)
chr6 (261-324)||(10008188-10008251)
chr6 (264-318)||(19418593-19418647)
[»] chr2 (4 HSPs)
chr2 (237-324)||(4978807-4978894)
chr2 (237-324)||(4996715-4996802)
chr2 (287-318)||(36622124-36622155)
chr2 (264-321)||(13738453-13738510)
[»] chr1 (2 HSPs)
chr1 (268-324)||(46295926-46295982)
chr1 (264-321)||(13969157-13969214)


Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 41760699 - 41760198
Alignment:
Q  19 agaagagttgagacagaggagtagggttaaacataaagcagaaatgttttgggtgggatatataatattcataggaaggaagaatcatggtaataaattg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760699 agaagagttgagacagaggagtagggttaaacataaagcagaaatgttttgggtgggatatataatattcataggaaggaagaatcatggtaataaattg 41760600  T
Q  119 gtgtgatcttattgccaatagtattcaaactcttcccataatcatttccgagtatttgcatcgcatgcaatatttttcatttcctttattggtttctctt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41760599 gtgtgatcttattgccaatagtattcaaactcttcccataatcatttccgagtatttgcatcgcatgcaatatttttcatttccttcattggtttctctt 41760500  T
Q  219 ttttacaatatgtataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 318  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760499 ttttacaatatgttttaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 41760400  T
Q  319 cttgatnnnnnnnnnnnncttacattttcaagacataatttctatttttagtttctttaactagtgtcccagagacacatgttaataaaaccctatgttt 418  Q
    ||||||            |||||||||| |||||||||||||||||||||||||||||||| |||| ||| || ||||| ||||| ||||||||||||||    
T  41760399 cttgataaaaaataaaaacttacatttttaagacataatttctatttttagtttctttaaccagtgcccctgaaacacaggttaacaaaaccctatgttt 41760300  T
Q  419 aatagtttctacactatggtatatgcaaatataccatttttatgcttttaatctgtgtagaaagttacttggaaaatatttattgtaatattcatttcag 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41760299 aatagtttctacactatggtatatgcaaatataccatttttatgcttttaatctgtgtagaaagttacttggaaaatatttattgtaatattcattttag 41760200  T
Q  519 tc 520  Q
    ||    
T  41760199 tc 41760198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 37928265 - 37928355
Alignment:
Q  231 tataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 321  Q
    |||| ||| |||| ||| |||||| ||| ||||||||||||| |||||||||  | |||| |||||| |||||||||||||||||||||||    
T  37928265 tatatggaaaatgctaactagtgtctcaaggacattggttaaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactt 37928355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 23142799 - 23142707
Alignment:
Q  233 taaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaa-gttgtgtaataattacttgat 324  Q
    |||||||||||||||  ||||| ||| |  |||||||||| |||||||||  | |||| |||||| ||||| |||||||||||||||||||||    
T  23142799 taaggagaatgttaacgagtgtctcaagagcattggttaaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgat 23142707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 11736281 - 11736227
Alignment:
Q  264 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 318  Q
    |||||||||||| ||||||  | ||||||||||||||||||| ||||||||||||    
T  11736281 attggttaagcagccaaaagaagtaagattttattaaaaagtggtgtaataatta 11736227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 321
Target Start/End: Complemental strand, 18221208 - 18221174
Alignment:
Q  287 taagattttattaaaaagttgtgtaataattactt 321  Q
    |||||||||||||||||||||||||||||||||||    
T  18221208 taagattttattaaaaagttgtgtaataattactt 18221174  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 16685729 - 16685790
Alignment:
Q  264 attggttaagcatccaaaaagaataagattttatt-aaaaagttgtgtaataattacttgat 324  Q
    |||||||||||||||||||  | |||| ||||||| ||||||||||||||| ||||||||||    
T  16685729 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgat 16685790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 17659965 - 17660026
Alignment:
Q  264 attggttaagcatccaaaaagaataagattttatt-aaaaagttgtgtaataattacttgat 324  Q
    |||||||||||||||||||  | |||| ||||||| ||||||||||||||| ||||||||||    
T  17659965 attggttaagcatccaaaataagtaagtttttatttaaaaagttgtgtaatcattacttgat 17660026  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 3624339 - 3624279
Alignment:
Q  264 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    ||||||||||||| ||||   | ||||||||||||||||||| |||||||||||| |||||    
T  3624339 attggttaagcattcaaaggaagtaagattttattaaaaagtggtgtaataattatttgat 3624279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Complemental strand, 1703966 - 1703935
Alignment:
Q  287 taagattttattaaaaagttgtgtaataatta 318  Q
    ||||||||||||||||||||||||||||||||    
T  1703966 taagattttattaaaaagttgtgtaataatta 1703935  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 7833860 - 7833805
Alignment:
Q  263 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 318  Q
    ||||||||||||| ||||||  | ||||||||||||||||||| ||| ||||||||    
T  7833860 cattggttaagcagccaaaacaagtaagattttattaaaaagtagtgcaataatta 7833805  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 45907179 - 45907089
Alignment:
Q  233 taaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaa-taagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||||||||||||||  |||||  |  ||| |||||||||||||  |||||||| |||| ||||||||||||||  |||||| ||||||||||    
T  45907179 taaggagaatgttaaccagtgtccccgggatattggttaagcat--aaaaagaagtaagtttttattaaaaagtaatgtaattattacttgat 45907089  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 7319227 - 7319316
Alignment:
Q  235 aggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||||||||||||| ||||   ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  7319227 aggagaatgttaaacagtgccccatgggcattggttaagcatccaaaaagagtaagattctattaaaaagttgtgtaataattacttgat 7319316  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 14044773 - 14044735
Alignment:
Q  286 ataagattttattaaaaagttgtgtaataattacttgat 324  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  14044773 ataagtttttataaaaaagttgtgtaataattacttgat 14044735  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 8435054 - 8435094
Alignment:
Q  263 cattggttaagcatccaaaaagaataagattttattaaaaa 303  Q
    ||||||||||||||||||||  | |||||||||||||||||    
T  8435054 cattggttaagcatccaaaataagtaagattttattaaaaa 8435094  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 324
Target Start/End: Original strand, 20775042 - 20775130
Alignment:
Q  236 ggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||||||| ||||||||| | ||  ||||||||||||||||||||||  | |||| |||||| |||||||| ||||||||||| |||||    
T  20775042 ggagaatgctaaatagtgctccaaagacattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgat 20775130  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 31152232 - 31152188
Alignment:
Q  280 aaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||    
T  31152232 aaaagaataagattttattaaaaaattgtgttataattatttgat 31152188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 27284069 - 27284130
Alignment:
Q  263 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||||||||| |||||||||  |||||| |||||| ||||||||||| ||| |||| |||||    
T  27284069 cattggttaaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgat 27284130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 52837383 - 52837322
Alignment:
Q  263 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    ||||||||||||||||||||  |  ||  |||||| ||||||||||||||||||||| ||||    
T  52837383 cattggttaagcatccaaaacaagaaaatttttatgaaaaagttgtgtaataattacgtgat 52837322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 31647720 - 31647779
Alignment:
Q  264 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||||||||||| ||||||  |||||| ||||||||||||||  |||||| ||||||||||    
T  31647720 attggttaagca-ccaaaagaaataagtttttattaaaaagtaatgtaattattacttgat 31647779  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 365
Target Start/End: Original strand, 3137396 - 3137499
Alignment:
Q  262 acattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgatnnnnnnnnnnnncttacattttcaagacataatttct 361  Q
    |||||||||| ||||||||||  |||||| || ||| ||||||||||||||||||||||||||            ||||||||||||||||| |||||||    
T  3137396 acattggttaggcatccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttct 3137495  T
Q  362 attt 365  Q
    ||||    
T  3137496 attt 3137499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 24757165 - 24757109
Alignment:
Q  262 acattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 318  Q
    |||||||||||||| | ||||   ||||||||||||||||||||  |||||||||||    
T  24757165 acattggttaagcagctaaaagagataagattttattaaaaagtgatgtaataatta 24757109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 44649048 - 44648996
Alignment:
Q  269 ttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 321  Q
    ||||||||||||||  |||||| ||| || ||||||||||||||| |||||||    
T  44649048 ttaagcatccaaaacaaataagttttcatgaaaaagttgtgtaatcattactt 44648996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 24344800 - 24344889
Alignment:
Q  235 aggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaa-taagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||||||||||||| ||||| ||| || ||||||||||||||  |||||||| ||| |||| | ||||||||||||||||||||| |||||    
T  24344800 aggagaatgttaaacagtgtctcaggggcattggttaagcat-aaaaaagaagtaatatttaactaaaaagttgtgtaataattatttgat 24344889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 36436552 - 36436642
Alignment:
Q  234 aaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||||||||||||||  |||  |||||| ||| |||||| |||| ||||  ||||||||||||||||||||| ||| |||||||| |||||    
T  36436552 aaggagaatgttaaaccgtgcctcatgggcatgggttaaacatctaaaataaataagattttattaaaaagtagtgcaataattatttgat 36436642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 48338779 - 48338868
Alignment:
Q  232 ataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 321  Q
    |||||||||||| ||| ||||| |  | || || |||||||||||||||||  | |||| |||||| |||||||||||||||||||||||    
T  48338779 ataaggagaatgctaactagtgctctaagggcaatggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactt 48338868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 49543170 - 49543260
Alignment:
Q  231 tataaggagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 321  Q
    ||||||||||||||||| ||||||   | ||||||||||||||||| ||||| || |||  ||| || |||||  ||||||||||||||||    
T  49543170 tataaggagaatgttaattagtgtcctaaggacattggttaagcattcaaaacgagtaaattttcatgaaaaaagtgtgtaataattactt 49543260  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 635821 - 635766
Alignment:
Q  263 cattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 318  Q
    ||||||||||||||||||||   ||||| ||||||| |||||||||||||| ||||    
T  635821 cattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcatta 635766  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 53818824 - 53818884
Alignment:
Q  264 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||| ||||||||||||||  |||||| ||| || |||||||||| |||| ||||||||||    
T  53818824 attgattaagcatccaaaataaataagttttaatgaaaaagttgtataatcattacttgat 53818884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 10008188 - 10008251
Alignment:
Q  261 gacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    ||||||||||||||| ||||||  | |||| |||||||||||||| ||||||| ||||||||||    
T  10008188 gacattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgat 10008251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 19418593 - 19418647
Alignment:
Q  264 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataatta 318  Q
    |||||||||||||||||||  | |||||||||||||||||||  |||||||||||    
T  19418593 attggttaagcatccaaaagaagtaagattttattaaaaagtgatgtaataatta 19418647  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 4978894 - 4978807
Alignment:
Q  237 gagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    ||||||| ||| ||||| | || | ||||||||||| |||||||||  |||||| |||||| |||| |||||||||| ||||||||||    
T  4978894 gagaatgataactagtgctacaagaacattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgat 4978807  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 4996802 - 4996715
Alignment:
Q  237 gagaatgttaaatagtgtttcatggacattggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    ||||||| ||| ||||| | || | ||||||||||| |||||||||  |||||| |||||| |||| |||||||||| ||||||||||    
T  4996802 gagaatgataactagtgctacaagaacattggttaaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgat 4996715  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 318
Target Start/End: Original strand, 36622124 - 36622155
Alignment:
Q  287 taagattttattaaaaagttgtgtaataatta 318  Q
    ||||||||||||||||||||||||||||||||    
T  36622124 taagattttattaaaaagttgtgtaataatta 36622155  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 13738510 - 13738453
Alignment:
Q  264 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 321  Q
    |||||||||||||||||||  | |||| |||||| ||||| ||||||||| |||||||    
T  13738510 attggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactt 13738453  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 46295982 - 46295926
Alignment:
Q  268 gttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattacttgat 324  Q
    |||||||||||||||  |||||| |||||| |||||||||||| || ||||||||||    
T  46295982 gttaagcatccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgat 46295926  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 13969214 - 13969157
Alignment:
Q  264 attggttaagcatccaaaaagaataagattttattaaaaagttgtgtaataattactt 321  Q
    |||||||||||| ||||||  | |||| |||||| ||||| |||||||||||||||||    
T  13969214 attggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattactt 13969157  T

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