View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19666_low_3 (Length: 520)

Name: NF19666_low_3
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19666_low_3
NF19666_low_3
[»] chr3 (8 HSPs)
chr3 (13-463)||(17154570-17155010)
chr3 (464-506)||(10244878-10244920)
chr3 (463-506)||(10238756-10238799)
chr3 (463-506)||(11840269-11840312)
chr3 (463-506)||(55003945-55003988)
chr3 (464-506)||(17056335-17056377)
chr3 (463-506)||(42191764-42191807)
chr3 (464-506)||(42197706-42197748)
[»] scaffold0180 (3 HSPs)
scaffold0180 (177-431)||(18869-19108)
scaffold0180 (65-158)||(19278-19368)
scaffold0180 (408-463)||(18811-18866)
[»] chr1 (6 HSPs)
chr1 (463-506)||(12184140-12184183)
chr1 (463-506)||(25382079-25382122)
chr1 (464-506)||(1077818-1077860)
chr1 (464-506)||(50305771-50305813)
chr1 (464-506)||(8093389-8093431)
chr1 (464-506)||(25388046-25388088)
[»] chr7 (2 HSPs)
chr7 (464-506)||(5979720-5979762)
chr7 (464-504)||(18667750-18667790)
[»] chr4 (3 HSPs)
chr4 (464-506)||(24287561-24287603)
chr4 (464-506)||(532128-532170)
chr4 (463-506)||(17627318-17627361)
[»] chr5 (5 HSPs)
chr5 (463-506)||(32094765-32094808)
chr5 (463-506)||(32097565-32097608)
chr5 (464-506)||(12692824-12692866)
chr5 (464-506)||(20499712-20499754)
chr5 (465-506)||(33753774-33753815)
[»] scaffold0208 (1 HSPs)
scaffold0208 (464-506)||(6096-6138)
[»] chr8 (6 HSPs)
chr8 (464-506)||(9934857-9934899)
chr8 (464-506)||(36818546-36818588)
chr8 (463-506)||(32890461-32890504)
chr8 (463-506)||(32896585-32896628)
chr8 (464-506)||(42993543-42993585)
chr8 (464-500)||(7769658-7769694)
[»] chr6 (6 HSPs)
chr6 (464-506)||(25343201-25343243)
chr6 (463-506)||(17581177-17581220)
chr6 (464-506)||(4580865-4580907)
chr6 (464-506)||(30392921-30392963)
chr6 (464-506)||(30906124-30906166)
chr6 (462-506)||(21197585-21197628)
[»] chr2 (5 HSPs)
chr2 (464-506)||(36749988-36750030)
chr2 (463-506)||(13455672-13455715)
chr2 (463-506)||(13461613-13461656)
chr2 (463-506)||(35085223-35085266)
chr2 (464-506)||(35091196-35091238)
[»] scaffold0064 (1 HSPs)
scaffold0064 (463-506)||(13846-13889)
[»] scaffold1114 (1 HSPs)
scaffold1114 (464-506)||(637-679)


Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Complemental strand, 17155010 - 17154570
Alignment:
Q  13 aatattatgttgaaattttgaaaaacatgaagaatgttactcatgtgtgcataaa-cttataatttttattgtttgttcaggatttgttacaagtttgag 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  17155010 aatattatgttgaaattttgaaaaacatgaagaatgttactcatgtgtgcataaaacttataatttttcttgtttgttcaggatttgttacaagtttgag 17154911  T
Q  112 gattccaacattagattcaacctgcgttgttctccagaggaaagaaacccgaaaagcttgttgtgtagaggattgtagtccaaattgtgatgctgattgc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17154910 gattccaacattagattcaacctgcgttgttctccagaggaaagaaacccggaaagcttgttgtgtagaggattgtagtccaaattgtgatgctgattgc 17154811  T
Q  212 aaatcgaggggatttgcgataggtggatcatgtgatccacgaactggaaatgagttgtgttgttgttttatggagtgagttatgttatatcactacaatc 311  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  17154810 aaatcgaggggatttccgataggtggatcatgtgatccacgaactggaaatgagttgtgttgttgttttatggagtgagttatgttatatcactaca--- 17154714  T
Q  312 gatcgttgaaaataaaagatgcacttgaccttttctctgaaacttacaatgtgtaaaaactctgcattgttgaagaagcattaaacttgattattgatga 411  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  17154713 -atcgttgaaaataaaagatgcacttgaccttttctctgaaacttacaatgtgtaaaaactc-------ttgaagaagcattaaacttgattattgatga 17154622  T
Q  412 atgcatttcaaaagaataatttgttcattaagaatttatgttattgactagt 463  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17154621 ttgcatttcaaaagaataatttgttcattaagaatttatgttattgactagt 17154570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 10244920 - 10244878
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  10244920 tgttggaatattttattatttaataatatttcaatatcattat 10244878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 10238799 - 10238756
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  10238799 ttgttggaatattttattatttaataatattccaatatcattat 10238756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 11840312 - 11840269
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  11840312 ttgttggaatattttattatttaataatattccaatatcattat 11840269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 55003988 - 55003945
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  55003988 ttgttggaatattttattatttaataatattccaatatcattat 55003945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 17056377 - 17056335
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  17056377 tgttggaatattttattatttaataatattccaatatcattat 17056335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 42191807 - 42191764
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||    
T  42191807 ttgttagaatattttattatttaataatattccaatatcattat 42191764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 42197748 - 42197706
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||    
T  42197748 tgttagaatattttattatttaataatattccaatatcattat 42197706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 177 - 431
Target Start/End: Complemental strand, 19108 - 18869
Alignment:
Q  177 tagaggattgtagtccaaattgtgatgctgattgcaaatcgaggggatttgcgataggtggatcatgtgatccacgaactggaaatgagttgtgttgttg 276  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| | | | ||||||||||||||||||| ||||||||||||| |||   |||||    
T  19108 tagaggattgtagtccaaattgtgatgctaattgcaaatcgaggggatatccaaaaggtggatcatgtgatccatgaactggaaatgaattg---tgttg 19012  T
Q  277 ttttatggagtgagttatgttatatcactacaatcgatcgttgaaaataaaagatgcac-ttgaccttttctctgaaacttacaatgtgtaaaaactctg 375  Q
    ||||||||||||||| |||| |||| ||||||    | |||| ||||||||| |||||| |||||||         |||||||||| |||||||||| ||    
T  19011 ttttatggagtgagtcatgtaatatgactaca----accgttaaaaataaaatatgcactttgacct---------aacttacaatatgtaaaaactgtg 18925  T
Q  376 cattgttgaagaagcattaaacttgattattgatgaatgcatttcaaaagaataat 431  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18924 tattgttgaagaagcattaaacttgattattgatgaatgaatttcaaaagaataat 18869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 19368 - 19278
Alignment:
Q  65 aaacttataatttttattgtttgttcaggatttgttacaagtttgaggattccaacattagattcaacctgcgttgttctccagaggaaagaaa 158  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  |||   ||||||||||| |||||||    
T  19368 aaacttttaattttttttgtttgttcaggatttgttacaagtttgagaattccaacattagattcaagttgc---gttctccagagtaaagaaa 19278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 408 - 463
Target Start/End: Complemental strand, 18866 - 18811
Alignment:
Q  408 atgaatgcatttcaaaagaataatttgttcattaagaatttatgttattgactagt 463  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  18866 atgaatgaatttcaaaagaataatttgttcattaagaatttatattatagactagt 18811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 12184183 - 12184140
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  12184183 ttgttggaatattttattatttaataatatttcaatatcattat 12184140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 25382122 - 25382079
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  25382122 ttgttggaatattttattatttaataatattccaatatcattat 25382079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 1077818 - 1077860
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  1077818 tgttggaatattttattatttaataatattccaatatcattat 1077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 50305771 - 50305813
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  50305771 tgttggaatattttattatttaataatattccaatatcattat 50305813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 8093431 - 8093389
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||    
T  8093431 tgttggaatattttattatttaattatattccaatatcattat 8093389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 25388088 - 25388046
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||    
T  25388088 tgttggaatattttattaattaataatattccaatatcattat 25388046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 5979762 - 5979720
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  5979762 tgttggaatattttattatttaataatatttcaatatcattat 5979720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Complemental strand, 18667790 - 18667750
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcatt 504  Q
    |||||||||||||| ||||||||| ||||| ||||||||||    
T  18667790 tgttggaatattttattatttaattatattccaatatcatt 18667750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 24287561 - 24287603
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  24287561 tgttggaatattttattatttaataatatttcaatatcattat 24287603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 532170 - 532128
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  532170 tgttggaatattttattatttaataatattccaatatcattat 532128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 17627361 - 17627318
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||    
T  17627361 ttgttgaaatattttattatttaataatatttcgatatcattat 17627318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 32094808 - 32094765
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  32094808 ttgttggaatattttattatttaataatattccaatatcattat 32094765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 32097608 - 32097565
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  32097608 ttgttggaatattttattatttaataatattccaatatcattat 32097565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 12692866 - 12692824
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  12692866 tgttggaatattttattatttaataatattccaatatcattat 12692824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 20499712 - 20499754
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||    
T  20499712 tgttggaatattttattatttaattatatttcaacatcattat 20499754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 506
Target Start/End: Complemental strand, 33753815 - 33753774
Alignment:
Q  465 gttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||| |||||| ||||||||| ||||||||||||||||||    
T  33753815 gttggattattttattatttaattatatttcaatatcattat 33753774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 6096 - 6138
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  6096 tgttggaatattttattatttaataatattccaatatcattat 6138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 9934857 - 9934899
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| |||||||||||||||||||||| |||||    
T  9934857 tgttggaatattttattatttaataatatttcaatatgattat 9934899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 36818546 - 36818588
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  36818546 tgttggaatattttattatttaataatattccaatatcattat 36818588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 32890461 - 32890504
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||    
T  32890461 ttgttggaatgttttattatttaataatattccaatatcattat 32890504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 32896585 - 32896628
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||    
T  32896585 ttgttggaatgttttattatttaataatattccaatatcattat 32896628  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 42993585 - 42993543
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||    
T  42993585 tgttggaatgttttattatttaataatattccaatatcattat 42993543  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 500
Target Start/End: Original strand, 7769658 - 7769694
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatat 500  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  7769658 tgttggaatattttattatttaataatattccaatat 7769694  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 25343201 - 25343243
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  25343201 tgttggaatattttattatttaataatattccaatatcattat 25343243  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 17581177 - 17581220
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||||||||| ||||||||| ||||| ||||||||||||    
T  17581177 ttgttggaatattttattatttaattatattccaatatcattat 17581220  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 4580907 - 4580865
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||    
T  4580907 tgttggaatattttattaattaataatattccaatatcattat 4580865  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 30392921 - 30392963
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||| |||||||||| |||||||    
T  30392921 tgttggaatattttgttatttaattatatttcaatgtcattat 30392963  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 30906166 - 30906124
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| |||||| || ||||||||||||||||||    
T  30906166 tgttggaatattttattattttattatatttcaatatcattat 30906124  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 506
Target Start/End: Complemental strand, 21197628 - 21197585
Alignment:
Q  462 gttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||    
T  21197628 gttgttggaatatttttttatttaataata-ttccatatcattat 21197585  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 36749988 - 36750030
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  36749988 tgttggaatattttattatttaataatattccaatatcattat 36750030  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 13455672 - 13455715
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||    
T  13455672 ttgttagaatattttattatttaataatattccaatatcattat 13455715  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 13461613 - 13461656
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||    
T  13461613 ttgttagaatattttattatttaataatattccaatatcattat 13461656  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 35085266 - 35085223
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||    
T  35085266 ttgttggaatgttttattatttaataatattccaatatcattat 35085223  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Complemental strand, 35091238 - 35091196
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||    
T  35091238 tgttggaatgttttattatttaataatattccaatatcattat 35091196  T

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Target: scaffold0064 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Original strand, 13846 - 13889
Alignment:
Q  463 ttgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    ||||||||||||||| ||||||||| ||||| ||||||||||||    
T  13846 ttgttggaatattttattatttaattatattccaatatcattat 13889  T

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Target: scaffold1114 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 506
Target Start/End: Original strand, 637 - 679
Alignment:
Q  464 tgttggaatattttcttatttaataatatttcaatatcattat 506  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||    
T  637 tgttggaatattttattatttaattatattccaatatcattat 679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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