View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19666_low_9 (Length: 298)
Name: NF19666_low_9
Description: NF19666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19666_low_9 |
 | |
|
| [»] scaffold0426 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0426 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0426
Description:
Target: scaffold0426; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 600 - 886
Alignment:
| Q |
1 |
aattgtactgacatgaatgatttttggctgtgacatgaacaattacgtcaattatgcagaaattctggtgtgcaagtgtctgttgaacctacaaatattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
600 |
aattgtactgacatgaatgatttttggctgtgacatgaacaattacgtcaattatgcagaaattctggtgtgcatgtgtctgttgaacctacaaatattc |
699 |
T |
|
| Q |
101 |
gggactccttgtatcgagcatcagttaatttggttttagatgcttgcagcaagtgtgatcttcatagtcttgcgtctgtgtccctttctttactgctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
700 |
gggactccttgtatcgagcatcagttaatttggttttagatgcttgcagcaagtgtgatcttcatagtcttgcgtctgtgtctctttctttactgctaga |
799 |
T |
|
| Q |
201 |
tagcagctgttaatgatgttgtgtacttctattttaatgattattttgtttatattcagtgcaccgacttactctacttcatttcat |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
800 |
tagcagctgttaatgatgttgtgtacttctattttaatgattattttgtttatattcagtgcaccgacttactctacttcatttcat |
886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 287
Target Start/End: Original strand, 52726015 - 52726297
Alignment:
| Q |
6 |
tactgacatgaatgatttttggctgtg-acatgaacaattacgtcaattatgcagaaattctggtgtgcaagtgtctgttgaacctacaaatattcggga |
104 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52726015 |
tactgacgtgaatgttttttggctgtgcacatgaacagttacgtcaattatgcagaaattctggtgtgcaagtgtctgttgaacctacaaatattcggga |
52726114 |
T |
|
| Q |
105 |
ctccttgtatcgagcatcagttaatttggttttagatgcttgcagcaagtgtgatcttcatagtcttgcgtctgtgtccctttctttactgctagatagc |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
52726115 |
atccttgtatcgagcatcagttaattttgttttagatgcttgcagcaggtgtgatcttcgtagtcctgcgtctgtgtccctttctttactgctaggtagc |
52726214 |
T |
|
| Q |
205 |
agctgttaatgatgttgtgtacttctattttaatgattattttgtttatattcagtgcaccgacttactctacttcatttcat |
287 |
Q |
| |
|
|||||||||| ||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
52726215 |
agctgttaatcatgctgtatacttctgttttaatgattattttgtttatatttagtgcaccgacttactctacttcagttcat |
52726297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University