View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19668_high_1_N (Length: 361)
Name: NF19668_high_1_N
Description: NF19668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19668_high_1_N |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 38224614 - 38224432
Alignment:
| Q |
14 |
agatgtgataacactcaatgggaccatttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgat |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38224614 |
agatgtgataacactcaatggggccatttataagattaacgcaaacaagataatcagagtagcaaacaagctttgtataacccaaatccttctccatgat |
38224515 |
T |
|
| Q |
114 |
cagattgtgatagataatagaaagctcagtcaacaagatgtcaaatgatcctgaaatgaaaccagagaaacccacaatgaata |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38224514 |
cagattgtgatagataatagaaagctcagtcaacaagatgtcaaatgatcctggaatgaaaccagagaaacccgcaatgaata |
38224432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 193 - 361
Target Start/End: Complemental strand, 38224391 - 38224223
Alignment:
| Q |
193 |
aataggagtgtcatggtaactaccatccacattaagaatagcacccgaaatattaatattattccatctgatgtacctgttagccatagcaacagaaaca |
292 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
38224391 |
aataggagtgtcatgctaactaccatccacattaagaatagcacccgaaatattattattattccatctgatgtacctgttagccatatcaatagaaaca |
38224292 |
T |
|
| Q |
293 |
gaaggggaaaaattgaatacaacgctctcaatcaaattcttaatgttgcaagtaaaacgcagtcatgac |
361 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38224291 |
gaaggggaaaaattgaatacaatgctctcaatcgaattcttaatgttgcaagtaaaacgcagtcatgac |
38224223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 38945782 - 38945624
Alignment:
| Q |
38 |
catttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcagattgtgatagataatagaaag |
137 |
Q |
| |
|
||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||| |||||||||| ||||||||||| |||||| ||| |||||| |
|
|
| T |
38945782 |
catttataagattaatgcaaacaagagaatccgagtagcaaacaagctatgtataacccaaatccttcgccatgatcagaccgtgataaatagcagaaag |
38945683 |
T |
|
| Q |
138 |
ctcagtcaacaagatgtcaaatgatcctgaaatgaaaccagagaaacccacaatgaata |
196 |
Q |
| |
|
||| | ||||||||||||||||||||||| ||||||| ||||||||| | ||||||||| |
|
|
| T |
38945682 |
ctcggccaacaagatgtcaaatgatcctggaatgaaatcagagaaactcgcaatgaata |
38945624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 38945582 - 38945499
Alignment:
| Q |
193 |
aataggagtgtcatggtaactaccatccacattaagaatagcacccgaaatattaatattattccatctgatgtacctgttagc |
276 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
38945582 |
aatatgagtgtcatggcaactaccatccacattaagaatagcacctgaaatattattattattccatctgacgtacttgttagc |
38945499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 51303308 - 51303373
Alignment:
| Q |
210 |
aactaccatccacattaagaatagcacccgaaatattaatattattccatctgatgtacctgttag |
275 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
51303308 |
aacttccatccacattaagaatagcacctgaaaaattgttatctttccatctgatgtacctgttag |
51303373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 5204278 - 5204344
Alignment:
| Q |
210 |
aactaccatccacattaagaatagcacccgaaatattaatatta-ttccatctgatgtacctgttag |
275 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| ||| ||||| |||||||| ||||||||||||| |
|
|
| T |
5204278 |
aacttccatccacattaagaatagcacctgaaaaattgttattatttccatctaatgtacctgttag |
5204344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 10470196 - 10470281
Alignment:
| Q |
31 |
atgggaccatttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcag |
116 |
Q |
| |
|
||||||||||| ||||| || |||||| ||||| ||| ||| |||||| |||| |||| |||||||||||| || |||||||||| |
|
|
| T |
10470196 |
atgggaccattaataaggttgacgcaagcaagagaatcagaatagcaagcaagttttgcataactcaaatctttagccatgatcag |
10470281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 9536458 - 9536400
Alignment:
| Q |
210 |
aactaccatccacattaagaatagcacccgaaatattaatattattccatctgatgtac |
268 |
Q |
| |
|
|||| |||||||| |||||||| |||||| | |||||| | |||||||||||||||||| |
|
|
| T |
9536458 |
aacttccatccacgttaagaattgcacccaagatattattgttattccatctgatgtac |
9536400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 10470425 - 10470481
Alignment:
| Q |
216 |
catccacattaagaatagcacccgaaatattaatattattccatctgatgtacctgt |
272 |
Q |
| |
|
||||||||||||||||| ||| | || |||| |||| ||||||||||||||||||| |
|
|
| T |
10470425 |
catccacattaagaataacacttgtaaaattattattgttccatctgatgtacctgt |
10470481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 1928965 - 1929123
Alignment:
| Q |
38 |
catttataagattaacgcaaacaagataattagagtagcaaacaagctttgtataactcaaatccttctccatgatcagattgtgatagataatagaaag |
137 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
1928965 |
catttataagattaatgcaaacaagagaatcagagtagcaaacaagctctgtataactcaaatccttctccatgatcagaccatgatagatagcagaaag |
1929064 |
T |
|
| Q |
138 |
ctcagtcaacaagatgtcaaatgatcctgaaatgaaaccagagaaacccacaatgaata |
196 |
Q |
| |
|
||| | |||||||||||||||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
1929065 |
ctcggccaacaagatgtcaaatgatcctagaatgaaatcagagatacccacaatgaata |
1929123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 1929518 - 1929603
Alignment:
| Q |
249 |
tattattccatctgatgtacctgttagccatagcaacagaaacagaaggg--gaaaaattgaatacaacgctctcaatcaaattct |
332 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||||||| ||||| ||||||||| | ||| |||||||||| |||||| |
|
|
| T |
1929518 |
tattattccatctgatgtacctgttagtcgtagcagcagaaacataagggaaaaaaaattgagtgcaatgctctcaatcgaattct |
1929603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University