View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19669_high_1 (Length: 461)
Name: NF19669_high_1
Description: NF19669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19669_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 446
Target Start/End: Original strand, 52925784 - 52926221
Alignment:
| Q |
9 |
atggacatcatcaaggttgcacagcctccaaaagtttctcataaacttgtctagcagtgagatcctccacctgaaatgatggtgaaaattagcgttagta |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52925784 |
atggacagcatcaaggttgcacagcctccaaaagtttctcataaacttgtctagcagtgagatcctccacctgaaatgatggtgaaaattagcattagta |
52925883 |
T |
|
| Q |
109 |
tatatgtttgttgagaaatacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52925884 |
tatatgtttgttgagaaatacttactacttggttaagttgaagaagacatgactgaccacaagaagctttgacttgttattccatcctctctgaagagtc |
52925983 |
T |
|
| Q |
209 |
atttgactcaatcttaaacctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52925984 |
atttgactcaatcttaaacctaaaacctttcccataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtgacacgaacat |
52926083 |
T |
|
| Q |
309 |
catcagcatttactctggtgattgcggagcggtgagcacgatcctcaacttcaatagcaagttgaacaagaccaccttcaagagtggaaatgcagggtgg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52926084 |
catcagcatttactctggtgattgcggagcggtgagcacgatcttcaacttcaatagcaagttgaacaagaccaccttcaagagtggaaatgcagggtgg |
52926183 |
T |
|
| Q |
409 |
aacgggagcatcctgtgggttggtttcagcagcaacag |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52926184 |
aacgggagcatcctgtgggttggtttcagcagcaacag |
52926221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University