View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19669_high_2 (Length: 450)
Name: NF19669_high_2
Description: NF19669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19669_high_2 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 4 - 436
Target Start/End: Complemental strand, 11780745 - 11780310
Alignment:
| Q |
4 |
tcaacagccaaaggataaaggtgatcgtgggaaacaaatcgttgtggctaagaaagcaccccctacaatatgtgcagcac-cacagatgggggg-cttcc |
101 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| | | || |||| |||||||| ||||| |
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| T |
11780745 |
tcaacaaccaaaggataaagatgatcgtgggaaacaaatcgttgtggctgagaaagcactccctacaataactcgacaacacacaaatgggggggcttcc |
11780646 |
T |
|
| Q |
102 |
acttcggccaatggaagtacttggacttgggttccggttccgattacttcgacaatcagcacttctcagagagctccggttactactgccccttcaacac |
201 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
11780645 |
acttcggccaatggaagtacttggacttaggttccggttccgattacttcgacagtcaccacttctcagagagttccggttactactgccccttcaacac |
11780546 |
T |
|
| Q |
202 |
tagctccgccttctcaggctattccggaccctattattgctagctcacacatggggccggttgttaattctacatcatcagttgttacttctcatatgac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
11780545 |
tagctccgccttctcaggctattccggaccctattattgctagctcacacatggggtcggttgttaattctacttcagcagttgttacttctcatatgac |
11780446 |
T |
|
| Q |
302 |
ggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacg |
401 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
11780445 |
ggtccctatgcccaggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtgaggagctgctactagctacg |
11780346 |
T |
|
| Q |
402 |
ccagtgtttgaaattgttt-cccggttgcatgatga |
436 |
Q |
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||||||||||||||||||| |||| ||||||||||| |
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| T |
11780345 |
ccagtgtttgaaattgtttccccgattgcatgatga |
11780310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 84 - 422
Target Start/End: Complemental strand, 17159082 - 17158744
Alignment:
| Q |
84 |
cacagatggggggcttccacttcggccaatggaagtacttggacttgggttccggttccgattacttcgacaatcagcacttctcagagagctccggtta |
183 |
Q |
| |
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|||| |||||||||||| |||| ||||||||| ||||| | ||||||||||||||||||||||||||| ||| ||| ||||| |||||||| || ||||| |
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| T |
17159082 |
cacatatggggggcttcaactttggccaatggcagtacctcgacttgggttccggttccgattacttcaacagtcaccacttttcagagagttctggtta |
17158983 |
T |
|
| Q |
184 |
ctactgccccttcaacactagctccgccttctcaggctattccggaccctattattgctagctcacacatggggccggttgttaattctacatcatcagt |
283 |
Q |
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||||| ||||||||||||| |||| | |||||||||||||||||| || || |||||||||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
17158982 |
ctactaccccttcaacactggctctgtcttctcaggctattccggtccgtactattgctagctcacacatggggccggttgttacttctacttcagcagt |
17158883 |
T |
|
| Q |
284 |
tgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgag |
383 |
Q |
| |
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|||||||||||| |||| ||||||||||| | ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17158882 |
tgttacttctcagttgacagtccctatgcccaagacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaa |
17158783 |
T |
|
| Q |
384 |
gagctgctactagctacgccagtgtttgaaattgtttcc |
422 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||||| |
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| T |
17158782 |
aagctgccactcgctacgccagtgtttgaaattgtttcc |
17158744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 4 - 423
Target Start/End: Original strand, 12101447 - 12101867
Alignment:
| Q |
4 |
tcaacagccaaaggataaaggtgatcgtgggaaacaaatcgttgtggctaagaaagcaccccctacaatatgtg--cagcaccacagatgggg-ggcttc |
100 |
Q |
| |
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||||| |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||||||| || | | |||||| | |||||||| |||||| |
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| T |
12101447 |
tcaaccgccaaaggataaagatgatcgtggaaaacaaattattgtggctgagaaagcaccccctaaaacaactcgccagcac-atagatggggaggcttc |
12101545 |
T |
|
| Q |
101 |
cacttcggccaatggaagtacttggacttgggttccggttccgattacttcgacaatcagcacttctcagagagctccggttactactgccccttcaaca |
200 |
Q |
| |
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|||||| |||||||| ||||| ||||||||||||||| ||| ||||||||||| | ||| |||| ||||||||| || ||| ||| |||||||||||||| |
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| T |
12101546 |
cacttcagccaatggcagtacctggacttgggttccgattctgattacttcgatagtcaccactactcagagagttctggtcacttctgccccttcaaca |
12101645 |
T |
|
| Q |
201 |
ctagctccgccttctcaggctattccggaccctattattgctagctcacacatggggccggttgttaattctacatcatcagttgttacttctcatatga |
300 |
Q |
| |
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|| |||| |||||||| ||||||||||| ||||| || |||||| ||||||| |||||||| | ||||| ||| |||||| |||||| || |||| |
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| T |
12101646 |
ctggctcagccttctctggctattccggccccta------cttgctcacccatggggtcggttgttcactctacttcaacagttgatacttcacagatga |
12101739 |
T |
|
| Q |
301 |
cg-----gtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctacta |
395 |
Q |
| |
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| || ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | || | |
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| T |
12101740 |
tgaaggaatcactatgcctatgacgtcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaa |
12101839 |
T |
|
| Q |
396 |
gctacgccagtgtttgaaattgtttccc |
423 |
Q |
| |
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|| || | ||||||||||||| |||||| |
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| T |
12101840 |
gcaacacgagtgtttgaaattatttccc |
12101867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 14977301 - 14977410
Alignment:
| Q |
91 |
ggggggcttccacttcggccaatggaagtacttggacttgggttccggttccgattacttcgacaatcagcacttctcagagagctccggttactactgc |
190 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | || |||||||||| ||| |||||| |||| |
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| T |
14977301 |
ggggagcttccacttcagccaatggcagtacttgtacttgggttccggttccgattacttcgacaattactacctctcagagagttccagttacttctgc |
14977400 |
T |
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| Q |
191 |
cccttcaaca |
200 |
Q |
| |
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| || ||||| |
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| T |
14977401 |
ctctgcaaca |
14977410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 412
Target Start/End: Original strand, 14977470 - 14977595
Alignment:
| Q |
287 |
tacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggag |
386 |
Q |
| |
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||||||||| |||| ||||||| |||| ||||| || ||||| ||||||||||| ||||| ||| | || ||| ||||||| | |||||||||||| || |
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| T |
14977470 |
tacttctcagatgatggtccctgtgcccaggacgtctttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaag |
14977569 |
T |
|
| Q |
387 |
ctgctactagctacgccagtgtttga |
412 |
Q |
| |
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||| | |||||| |||||| |||| |
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| T |
14977570 |
ttgccagaagctacaccagtgattga |
14977595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 11776713 - 11776668
Alignment:
| Q |
96 |
gcttccacttcggccaatggaagtacttggacttgggttccggttc |
141 |
Q |
| |
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||||||| ||||||||||||||| ||||||| ||||||||||||| |
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| T |
11776713 |
gcttccatttcggccaatggaagcgcttggacgtgggttccggttc |
11776668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 140525 - 140467
Alignment:
| Q |
93 |
ggggcttccacttcggccaatggaagtacttggacttgggttccggttccgattacttc |
151 |
Q |
| |
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|||||||| ||||||||||||||| |||||||||||||| | |||||||| |||||||| |
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| T |
140525 |
ggggcttcaacttcggccaatggaggtacttggacttggttcccggttcctattacttc |
140467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 19069709 - 19069624
Alignment:
| Q |
324 |
ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtt |
409 |
Q |
| |
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|||||||||| ||||||||||||||| | || || | ||||||||| |||||| | ||||||||| || |||||||||||||| |
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| T |
19069709 |
ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgtt |
19069624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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