View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19669_high_3 (Length: 358)
Name: NF19669_high_3
Description: NF19669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19669_high_3 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 358
Target Start/End: Original strand, 34899455 - 34899783
Alignment:
| Q |
29 |
aaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacnnnnnnnntctatgaagaagtgtctgctaagacttaca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34899455 |
aaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacaaaaaaaatctatgaagaagtgtctgctaagacttaca |
34899554 |
T |
|
| Q |
129 |
aataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaattagtgggtcagttg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34899555 |
aataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaactagtgggtcagttg |
34899654 |
T |
|
| Q |
229 |
acatgttccacttggtttttatgcgtaacgtaccacacaagcatatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtga |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899655 |
acatgttccacttggtttttatgcgtaa-gtaccacacaagcatatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtga |
34899753 |
T |
|
| Q |
329 |
tatcatctgcacaaattcacataaaatttt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34899754 |
tatcatctgcacaaattcacataaaatttt |
34899783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University