View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_high_13 (Length: 251)
Name: NF1966_high_13
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 12698174 - 12698415
Alignment:
| Q |
1 |
aaattttgatttgattaatattttaagtataaatattatgatctttaaattgtaacaaacctaataaatcatgttcgtcttcttcgatgacaccaatgaa |
100 |
Q |
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| T |
12698174 |
aaattttgatttgattaatattttaagtataaatattatgatctttaaattgtaacaaacctaataaatcatgtttgtcttcttcgaagacaccaatgaa |
12698273 |
T |
|
| Q |
101 |
atgtatgnnnnnnnnnataactgtaacaatagtaaaaactatcnnnnnnncattaccacatgtaacttggcatgacacgtcaaacatatgacagtgtcac |
200 |
Q |
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| T |
12698274 |
atgtatgtttttttttataactataacaatagtaaaaactatcaaaaaaacattaccacatgtaacttggcatgacacgtcaaacatatggcagtgtcac |
12698373 |
T |
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| Q |
201 |
atagacagtcaaatgacatgtcaagttaactaacagtataat |
242 |
Q |
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| T |
12698374 |
gtagacagtcaaatgacatgtcaagttaactaacagaataat |
12698415 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 33614729 - 33614646
Alignment:
| Q |
153 |
ttaccacatgtaacttggcatgacacgtcaaacatatgacagtgtcacatagacagtcaaatgacatgtcaagttaactaacag |
236 |
Q |
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| T |
33614729 |
ttaccacctgtgacgtggcatgacacgtcaaacacgtggcagtgccacatagacagtcaaatgccacgtcatgttgactaacag |
33614646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 44157550 - 44157466
Alignment:
| Q |
152 |
attaccacatgtaacttggcatgacacgtcaaacatatgacagtgtcacatagacagtcaaatgacatgtcaagttaactaacag |
236 |
Q |
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| T |
44157550 |
attacaacatgtgacgtggcatgacacatcagacacgtgacagtgtcacgtagacagtcaaatgtcatgttatgttgactaacag |
44157466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 30333857 - 30333906
Alignment:
| Q |
47 |
aaattgtaacaaacctaataaatcatgttcgtcttcttcgatgacaccaa |
96 |
Q |
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| T |
30333857 |
aaattataacaaacctaataaatcatgtttatctttttcaatgacaccaa |
30333906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 47984939 - 47984886
Alignment:
| Q |
189 |
tgacagtgtcacatagacagtcaaatgacatgtcaagttaactaacagtataat |
242 |
Q |
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|||||||||||| ||||||||| |||| ||||||| ||| |||||||| ||||| |
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| T |
47984939 |
tgacagtgtcacgtagacagtcgaatgtcatgtcacgttgactaacagaataat |
47984886 |
T |
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