View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1966_high_3 (Length: 518)
Name: NF1966_high_3
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 34 - 512
Target Start/End: Complemental strand, 52913490 - 52913008
Alignment:
| Q |
34 |
tactaagaaatgtttttctatccaaatcaaaataa----ggtgactagtaattcttttaaagctcaccgttaatctaaacatgtacttaccatcttctgg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52913490 |
tactaagaaatgtttttctatccaaatcaaaataattaaggtgactagtaattcttttaaagctcaccgttaatctaaacatgcacttaccatcttctgg |
52913391 |
T |
|
| Q |
130 |
ctgagaggctggcgttgaattcttgccaatcacaatttggacatggattgaaggttctaacgctacggtctccatcgttgaaaccaccggtttggataag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52913390 |
ctgagaggctggcgttgaattcttgccaatcacaatttggacatggattgaaggttctaacgctacggtctccatcgttgaaaccaccggtttggataag |
52913291 |
T |
|
| Q |
230 |
agttccgttgggattgacggaaccggaggaacaccagatgttggtttggatgaagagtggtcggaatgtattagaaaagacgtcatattcaagggagtga |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52913290 |
agttccgttgggattgacggaaccggaggaacaccagatgttggtttggatgaagagtggtcggaatgtattagaaaagacgtcatattcaagggagtga |
52913191 |
T |
|
| Q |
330 |
gcagtgcaatcatttttaacagcttgctcttgtgggttaacacggcatctaccgttgggtaaagataagtttgagaagccaaaatctgtacggtcaaaaa |
429 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52913190 |
gcagtgcaatcatttttcacagcttgctcttgtgggttaacacggcatctaccgttgggtaaagataagtttgagaagccaaaatctgtacggtcaaaaa |
52913091 |
T |
|
| Q |
430 |
tgatgacacggtcgttgtgtagtaattgcatatgcatggctacaatgccaatgttgttttgtaagagctgccattgtccacca |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52913090 |
tgatgacacggtcgttgtgtagtaattgcatatgcatggctacaatgccaatgttgttttgtaagagctgccattgtccacca |
52913008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 16846220 - 16846156
Alignment:
| Q |
201 |
ccatcgttgaaaccaccggtttggataagagttccgttgggattgacggaaccggaggaacacca |
265 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||| |||| ||| | ||||||||||||||| |
|
|
| T |
16846220 |
ccatcgttgaagccaccggtttggattagggttccggtgggggagactgcaccggaggaacacca |
16846156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University