View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1966_high_8 (Length: 342)
Name: NF1966_high_8
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 37339042 - 37338722
Alignment:
| Q |
17 |
agaacacccttctatttccaaggtacattgaggtgggttaatgtgagataacatgacacttaatgtatcaacatccattacatgtaacctggtaggataa |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37339042 |
agaacacctttctatttccaaggtacattgaggtgggttaatgtgagataacatgacacttaatgtatcaacatccattacatgtaacctggtaggataa |
37338943 |
T |
|
| Q |
117 |
accttatcaacgtgaagaaaagaatcgacatcaattctggtccttgtttccatcacttgcttagtagtcgactgcgactgagatgcatttttcctcaatg |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37338942 |
accttatcaacatgaagaaaagaatcgacatcaattctggtccttgtttccatcacttgcttagtagtcgactgcgactgagatgcatttttcctcaatg |
37338843 |
T |
|
| Q |
217 |
gagatttaaatgtaaatgaaatgacatccctgctttctgtcatgctatatgcatcattgtaaatactttcatccattgtaacattacattttatagactt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37338842 |
gagatttaaatgtaaatgaaatgacatccctgctttctgtcatgctatatgcatcattgtaaatactttcatccattgtaacattacattttatagactt |
37338743 |
T |
|
| Q |
317 |
tctatcatgagtattatctac |
337 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
37338742 |
tctatcatgagtattaactac |
37338722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University