View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_1 (Length: 710)
Name: NF1966_low_1
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 1e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 44878301 - 44878130
Alignment:
| Q |
46 |
tgactccctccttatttgactctatggagagaaaaatgaacacacgcagtgagaaggacactgacattttggcattgcattgcttgatcattgagaagaa |
145 |
Q |
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| T |
44878301 |
tgactccctccttatttgactctatggaga--aaaatgaacacacgcagtgagaaggacactgacattttggcattgcattgcttgatcattgagaagaa |
44878204 |
T |
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| Q |
146 |
cttggcaaatgttccaagcaatagctaacaacaagttagacattttggtctttccttcagtgacgtgtatgcca |
219 |
Q |
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| T |
44878203 |
cttggcaaatgttccaagcaatagctaacaacaagttagacattttggtctttccttcagtgacgtgtatgcca |
44878130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 295 - 467
Target Start/End: Complemental strand, 44878054 - 44877888
Alignment:
| Q |
295 |
aacaacaacttaaccataatcacttaccatggttaatttccactctcaaaccatgcaagtttcttcttcatcacttaacccatggttcccaactctcact |
394 |
Q |
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| T |
44878054 |
aacaacaacttaaccataatcacttaccatggttaatttccactctcaaaccatgcaagtttcttcttcatcacttaacccatggttcccaactctcact |
44877955 |
T |
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| Q |
395 |
tccaaccgcttccgccgcattcacttaccggaaccatcttccaccaccacaaccgccaccgtatactcaccac |
467 |
Q |
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| T |
44877954 |
tccaaccgcttccgccgcattcacttaccggaaccatcttccacc------accgccaccgtatactcaccac |
44877888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 564 - 710
Target Start/End: Complemental strand, 44877758 - 44877612
Alignment:
| Q |
564 |
cgtccacgttcacgttcaccgtaacttcaatattcgaacgattcacagaaagatcaataaaatccatagtctacgccgaaaaaggagcgaaattcttcaa |
663 |
Q |
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| T |
44877758 |
cgtccacgttcacgttcaccgtaacttcaatattcgaacgattcacagaaagatcaataaaatctatagtctacgccgaaaaagaagcgaaattcttcaa |
44877659 |
T |
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| Q |
664 |
gagcgattttctttacgcacagcatatcatgcttggtctcatagctg |
710 |
Q |
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| T |
44877658 |
gagcgattttctttacgcacagcatatcatgcttggtctcatagctg |
44877612 |
T |
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