View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_10 (Length: 398)
Name: NF1966_low_10
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 197 - 384
Target Start/End: Original strand, 27652919 - 27653106
Alignment:
| Q |
197 |
aaatatcaatagcattctacgaaaacacaattgtttgagaatttggctcataaaccgagttatttaattcaagaatggattaatgattgcatagtttcca |
296 |
Q |
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| T |
27652919 |
aaatatcaatagcattctagaaaaacatgattgtttaagaatttagctcataaactgagttatttaattcaagaatggattaatgattgcatagttccca |
27653018 |
T |
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| Q |
297 |
cgcacaacgattcaaatctagaagattaatagtaattggtatagtaccatcaacgaaattagataacttgttcttggcaccaagttct |
384 |
Q |
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| T |
27653019 |
cgcacaatgattcaaatctagaagattattagtaattggtatagtaccatcaatgaaattagataacttgttcttggcgccaagttct |
27653106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 11685385 - 11685505
Alignment:
| Q |
10 |
gatgaacacaagtgcaaataggcattggtcgatgagtattaagttcctccgaaagtcatttcatcttagtaaagtaatctaacacaaatttcgaaccttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
11685385 |
gatgaacacaagtgcaaataggcattggtcgatgagtattaagttcctccgaaattcatttcatcttagtaaagtaatctaacacaaatttcaaacc-tt |
11685483 |
T |
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| Q |
110 |
gcttaagattgttgacagcaaa |
131 |
Q |
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| T |
11685484 |
gcttaagactgttgatagcaaa |
11685505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 11715688 - 11715568
Alignment:
| Q |
10 |
gatgaacacaagtgcaaataggcattggtcgatgagtattaagttcctccgaaagtcatttcatcttagtaaagtaatctaacacaaatttcgaaccttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
11715688 |
gatgaacacaagtgcaaataggcattggtcgatgagtattaagttcctccgaaattcatttcatcttagtaaagtaatctaacacaaatttcaaacc-tt |
11715590 |
T |
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| Q |
110 |
gcttaagattgttgacagcaaa |
131 |
Q |
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| T |
11715589 |
gcttaagactgttgatagcaaa |
11715568 |
T |
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