View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_12 (Length: 383)
Name: NF1966_low_12
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 42986106 - 42986462
Alignment:
| Q |
11 |
cagagacatggcagccgcgacgagggaaatgccagcgacggagttgaaactagggagatgggagagaacatattgaacaaaagcaaacagcacaatgaaa |
110 |
Q |
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| T |
42986106 |
cagagacatggcagccgcgacgagggaaataccagcgacggagttgaaactagggagatgggagagaacatattgaacaaaagcaaacagcacaatgaaa |
42986205 |
T |
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| Q |
111 |
taagttgtcttaataggctcacaatcatcacaaagaatctcatgaagtttcttaagagattttgcaccaataaccatgtaaactatatcaatgccaacct |
210 |
Q |
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| T |
42986206 |
taagttgtcttaataggctcacaatcatcacaaagaatctcatgaagtttcttaagagattttgcaccaataaccatgtaaactatatcaatgccaacct |
42986305 |
T |
|
| Q |
211 |
ccaccatgaattgttgaggcaccacaatccacaaaccaagtctttctccaaatgcatgctggcctaattcatgatacttgtcaaatctttttcctgatac |
310 |
Q |
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| T |
42986306 |
ccaccattaattgttgaggcaccacaatccacaaaccaagtctttctccaaatgcatgctggcttaattcatgatacttgtcaaatctttttcctgatac |
42986405 |
T |
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| Q |
311 |
ggattcatgcatttcagtcatttgccatgcagtgtacaatgtacaaatccatgaaag |
367 |
Q |
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| T |
42986406 |
ggattcatgcatttcaatcatttgccatgcagtgtacaatgtacaaatccatgaaag |
42986462 |
T |
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