View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1966_low_13 (Length: 373)
Name: NF1966_low_13
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 39279978 - 39280332
Alignment:
| Q |
1 |
cctattttacctcactcttttttatttgattatttactgctttcataagcgcgtgttcatgcgaataagtcaagaacttagttgttctagtgtttggctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39279978 |
cctattttacctcactcttttttatttgattatttactgctttcataagcgcgtgttcatgcgaataagtcaagaacttagttgttctagtgtttggctt |
39280077 |
T |
|
| Q |
101 |
actgaaactgttgtgttttatctgtagttgtcttccctggcaagtgagaacaaaattttggcagtgaagctaaaacaaatatataaggaggcttaagaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280078 |
actgaaactgttgtgttttatctgtagttgtcttccctggcaagtgagaacaaaattttggcagtgaagctaaaacaaatatataaggaggcttaagaag |
39280177 |
T |
|
| Q |
201 |
cctgtgaaacttctgcaaggtctttgaggttggtactttgtaaatgaatgattgacaagaatctcttaaactatttcaattgtattgtaaattccccgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280178 |
cctgtgaaacttctgcaaggtctttgaggttggtactttgtaaatgaatgattgacaagaatctcttaaactatttcaattgtattgtaaattccccgaa |
39280277 |
T |
|
| Q |
301 |
gttcagccatgagaaccgaacacgatccggacattgcactcttttattagataac |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280278 |
gttcagccatgagaaccgaacacgatccggacattgcactcttttattagataac |
39280332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University