View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_17 (Length: 334)
Name: NF1966_low_17
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 31678518 - 31678800
Alignment:
| Q |
12 |
acagatgcagttacaaaagtgatgaagaatgtgaagctatgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggcca |
111 |
Q |
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| T |
31678518 |
acagatgcagttacaaaagtgatgaagaatgtgaagctatgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggcca |
31678617 |
T |
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| Q |
112 |
tcatagttgcaaaagctctttatcaaattctgagatcactttattggaacctaataatacttcttctatgttccttagcttcaatgacagcctccaaatc |
211 |
Q |
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| T |
31678618 |
tcatagttgcaaaatctctttatcaaattctgagatcacattattggaacctaataatacttcatctatgtttcttagcttcaatgacaacctccaaatc |
31678717 |
T |
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| Q |
212 |
aaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaagagcctatagatgctattaatccctatcataa |
294 |
Q |
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| T |
31678718 |
aaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaagagcctatagatgctattaatccctatcataa |
31678800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 306
Target Start/End: Complemental strand, 31628873 - 31628579
Alignment:
| Q |
12 |
acagatgcagttacaaaagtgatgaagaatgtgaagctatgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggcca |
111 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31628873 |
acagatgcagttacaaaagtgatgaagaatgtgcagctatgaaacatgtgcaaagaattcaagaggaccctccattatacagaaccatatattatggcca |
31628774 |
T |
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| Q |
112 |
tcatagttgcaaaagctctttatcaaattctgagatcactttattggaacctaataatacttcttctatgttccttagcttcaatgacagcctccaaatc |
211 |
Q |
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| T |
31628773 |
tcataattgcaaaacctctttattaaattcagagatcacattattggaacctaatagtacttcttctatgttccttagcttcaatgacagcctccaaatc |
31628674 |
T |
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| Q |
212 |
aaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaagagcctatagatgctattaatccctatcataatcacattgctca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
31628673 |
aaagaacaatatcctgcattttcatcaccactttctgtaccaacaaaacaagagtctatagatgctattaatccctatcataatcaaattgctca |
31628579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 31657175 - 31657265
Alignment:
| Q |
41 |
tgtgaagctatgaaacatgtgcagagaattcaagaggaccctccattatacagaaccatatattatggccatcatagttgcaaaagctctt |
131 |
Q |
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| T |
31657175 |
tgtgaagcaatcaaacatgttcaaagaattcaagagaaccctcctttgtaccggactacatattatgaccatcacacttgcaaaagctctt |
31657265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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