View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1966_low_2 (Length: 573)
Name: NF1966_low_2
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 9503033 - 9502491
Alignment:
| Q |
20 |
agcatccaattatctatctagttgtatactgcctagaaattagtactatcaaatatattaagaaaatcaaatatagtactac-----cttatgatcagaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9503033 |
agcatccaattatctatctagttgtatactgcctagaaattagtactatcaaatatattaagaaaatcaaatatagtactacagtaccttatgatcagaa |
9502934 |
T |
|
| Q |
115 |
gacaactccacgacttcaccacctcgtcccaaaacggctctagaatcaccacaattcgcaacaacaatctcctctttaacaacaaccgccacaacagccg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9502933 |
gacaactccacgacttcaccacctcgtcccaaaacggctctagaatcaccacaattcgcaacaacaatctcctctttaacaacaaccgccacaacagccg |
9502834 |
T |
|
| Q |
215 |
tggatcccacggtcctaaccgcggcatcacccgccacctccctatccattttaccaaaacacccttccatcaccctctcccaatcccattccctatcctc |
314 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9502833 |
tggatcccacggtcctaaccgtggcatcacccgccacctccctatccattttaccaaaacacccttccatcaccctctcccaatcccattccctatcctc |
9502734 |
T |
|
| Q |
315 |
ccaacacatctcgacctcctccgccacaatcctatacaacctctctctacacgacaccgccacctgagcaccaccgtgaccatcataaacaccgaagaaa |
414 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9502733 |
ccaaaacatctcaacctcctccgccacaatcctatacaacctctctctacacgacaccgccacctgagcaccaccgtgaccatcataaacaccgaagaaa |
9502634 |
T |
|
| Q |
415 |
tcacacttctctccatccttcatcgtaaaacctatccccacactcaccgcatcctccatttccttcctacagcctatggttgacaccgaaccatacgata |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9502633 |
tcacacttctctccatccttcatcgtaaaacctatctccatactcaccgcatcctccatttccttcctacagcctatggttgacaccgaaccatacgata |
9502534 |
T |
|
| Q |
515 |
gaggtcgctgttgttgttgataatgcttcacctgcaaataata |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9502533 |
gaggtcgctgttgttgttgataatgcttcacctgcaaataata |
9502491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University