View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_20 (Length: 296)
Name: NF1966_low_20
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_20 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 136 - 284
Target Start/End: Original strand, 27658121 - 27658269
Alignment:
| Q |
136 |
gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct |
235 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27658121 |
gtttcgttttccttctctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct |
27658220 |
T |
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| Q |
236 |
ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctc |
284 |
Q |
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| T |
27658221 |
ttgtacagtgccaccctctcatgctattttcggtcactccgcctgtctc |
27658269 |
T |
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Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 136 - 284
Target Start/End: Complemental strand, 37605941 - 37605795
Alignment:
| Q |
136 |
gtttcgttttccttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatct |
235 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37605941 |
gtttcgttttccttccctctttctgaatcactcatttcctatgagcaagaaaaaatcatctttcattcactcataggttctcgtcactccttcttcatct |
37605842 |
T |
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| Q |
236 |
ttgtacagtaccaccctctcatgctattttcggtcactccgcctgtctc |
284 |
Q |
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| T |
37605841 |
ttgtacagtgccacc--ctcatgctattttcggtcgctccacctatctc |
37605795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 33361104 - 33360981
Alignment:
| Q |
148 |
ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc |
247 |
Q |
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| T |
33361104 |
ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc |
33361008 |
T |
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| Q |
248 |
accctctcatgctattttcggtcactcc |
275 |
Q |
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| T |
33361007 |
agcctctcatgcta-tttcggtcactcc |
33360981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 148 - 275
Target Start/End: Original strand, 5742432 - 5742556
Alignment:
| Q |
148 |
ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc |
247 |
Q |
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|||||||| ||||||||||| ||||||||| || |||||| ||| |||||||||||||| ||| | ||| |||||| |||||||||||| |||| || |
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| T |
5742432 |
ttccctctttctgattcactaatttcctatgagaaagaactaatcatctttcattcactagtagttgctcatcactc---cttcatctttgtgcagtgcc |
5742528 |
T |
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| Q |
248 |
accctctcatgctattttcggtcactcc |
275 |
Q |
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||||||||||||||||| | |||||||| |
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| T |
5742529 |
accctctcatgctatttccagtcactcc |
5742556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 37606069 - 37606029
Alignment:
| Q |
18 |
aatacaaacacaaaaatgacaccatacactattactcaata |
58 |
Q |
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| T |
37606069 |
aatacaaacacaaatatgacaccatacactgttactcaata |
37606029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 1351 - 1228
Alignment:
| Q |
148 |
ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc |
247 |
Q |
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|||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||| |||| || |
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| T |
1351 |
ttccctctttctgattcagtcatttcccatgatcaagaacaaatcatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc |
1255 |
T |
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| Q |
248 |
accctctcatgctattttcggtcactcc |
275 |
Q |
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| T |
1254 |
agcctctcatgcta-tttcggtcactcc |
1228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 148 - 275
Target Start/End: Complemental strand, 18085380 - 18085257
Alignment:
| Q |
148 |
ttccctctctctgattcactcatttcctataagcaagaacaaattatctttcattcactcatagcttctcgtcactccttcttcatctttgtacagtacc |
247 |
Q |
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|||||||| ||||||||| |||||||| || | ||||||||||| |||||||||||||| ||| |||||||||||| |||||||||||| |||| || |
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| T |
18085380 |
ttccctctttctgattcagtcatttcccattaccaagaacaaataatctttcattcactaataatttctcgtcactc---cttcatctttgtgcagtgcc |
18085284 |
T |
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| Q |
248 |
accctctcatgctattttcggtcactcc |
275 |
Q |
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| |||||||||||| ||||||||||||| |
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| T |
18085283 |
agcctctcatgcta-tttcggtcactcc |
18085257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 31559506 - 31559546
Alignment:
| Q |
18 |
aatacaaacacaaaaatgacaccatacactattactcaata |
58 |
Q |
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|||||||||| ||| ||||||||||||||| |||||||||| |
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| T |
31559506 |
aatacaaacataaatatgacaccatacactgttactcaata |
31559546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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