View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1966_low_21 (Length: 293)
Name: NF1966_low_21
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_21 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 42474522 - 42474230
Alignment:
| Q |
1 |
agttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtcatcgagagagaatgatatgcaacgctttccatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42474522 |
agttctcaaaagcatttggttctaccaggtcacgacactgcttggtgggataatatctatggtcatcaagagagaatgatatgcaacgctttccatagaa |
42474423 |
T |
|
| Q |
101 |
acggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaaaccagcaaaatgtgtcactccatctagt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42474422 |
acggactttagggaagtagactctgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaaaccagcaaaaagtgtcactccatctagt |
42474323 |
T |
|
| Q |
201 |
gttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcct |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474322 |
gttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcct |
42474230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 42467859 - 42467568
Alignment:
| Q |
1 |
agttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtcatcgagagagaatgatatgcaacgctttccatagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42467859 |
agttctcaaaagcatttggttctac-aagtcaagacactgtttagtgggataatatctatggtcatcgagagagaatgatatgcaacgctttccatagaa |
42467761 |
T |
|
| Q |
101 |
acggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaaaccagcaaaatgtgtcactccatctagt |
200 |
Q |
| |
|
| || |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
42467760 |
atgggctttagggaagtagacgctgtttctcataattccagtgacgtaagtcctagaatgagatgacaaaaaactagcaaaaagtgtcactccatctagt |
42467661 |
T |
|
| Q |
201 |
gttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcct |
293 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42467660 |
gttctcacctcttttcattccattagtgtccgatctaatttgaaaattattgggtcctcaccacaacatatatgaatgacaaatatatttcct |
42467568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 42480057 - 42479765
Alignment:
| Q |
1 |
agttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtcatcgagagagaatgatatgcaacgctttccatagaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| ||||||| | | ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
42480057 |
agttctcaaaagtatttggttctaccttgtcacgacactgctcactgggataatatctacggtcatcaagagagaatgatatgcaacgttttccatagaa |
42479958 |
T |
|
| Q |
101 |
acggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaaaccagcaaaatgtgtcactccatctagt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| |
|
|
| T |
42479957 |
acggactttagggaagtagacactgtttctcattattccagtggcgtaagtcctagaatgagatgacaaaaaactagcaaaaagtgttactccatttagt |
42479858 |
T |
|
| Q |
201 |
gttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaatatatttcct |
293 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42479857 |
gatctcacctctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatatatgaactacaaatatatttcct |
42479765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 224
Target Start/End: Original strand, 26046498 - 26046660
Alignment:
| Q |
62 |
gtcatcgagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatga |
161 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||| ||||| ||||| || || |||||| |||||| |
|
|
| T |
26046498 |
gtcatcaagagagaatgatatgcaacgctttccataaaaacgaactttagagaagtagatactgttcctcatatttccaaggaggtcagtccttgaatga |
26046597 |
T |
|
| Q |
162 |
gatgacaaaaaaccagcaaaatgtgtcactccatctagtgttctcacttctttccattccatt |
224 |
Q |
| |
|
|| ||||| |||| |||||| | || |||||||||||||| | | |||| |||||||||| |
|
|
| T |
26046598 |
gaagacaagaaactagcaaatagagttgctccatctagtgtttttagctcttcccattccatt |
26046660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University