View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_22 (Length: 284)
Name: NF1966_low_22
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 34231277 - 34231530
Alignment:
| Q |
19 |
atgtcacataatgaccaccttgaaggccaacttccagatatgagctgcagtacttctctcattaccttggatctctcaggttgtggattccaaggatcaa |
118 |
Q |
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| T |
34231277 |
atgtcatataatgaccaccttgaaggccaacttccagaattgagctgtagtacttctctcattactttggatctctcaggttgtggattccaagggtcaa |
34231376 |
T |
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| Q |
119 |
ttcctctgtctttttctaaccttacacgtcttgcttccctacgtctgtcagggaaccacctaaatggttcaattccatccacaattttaaccttttcaca |
218 |
Q |
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| T |
34231377 |
ttcctctgtctttttctaaccttacacgtcttgcctccctacgtctgtcagggaaccacctaaacggttcaattccatccacaattttaaccttttcaca |
34231476 |
T |
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| Q |
219 |
tcttacctttctgtatctcgatgacaatgtactcagtggtcaaatgccggattc |
272 |
Q |
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| T |
34231477 |
tcttacctttctgtatctcgatgacaatgtactcaatggtcaaatcccggattc |
34231530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 41570495 - 41570658
Alignment:
| Q |
35 |
accttgaaggccaacttccagatatgagctgcagtacttctctcattaccttggatctctcaggttgtggattccaaggatcaattcctctgtctttttc |
134 |
Q |
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| T |
41570495 |
accttgaaggtcaacttccagatttgagctgtagcacttctcttagaatcttggatctttcatattgtctattcaaagggccaattcctctttctttctc |
41570594 |
T |
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| Q |
135 |
taaccttacacgtcttgcttccctacgtctgtcagggaaccacctaaatggttcaattccatcc |
198 |
Q |
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| T |
41570595 |
taacctcacatattttacttccctaagtctcatagagaacaaccttaatggttcaatcccatcc |
41570658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 34239225 - 34239318
Alignment:
| Q |
71 |
cttctctcattaccttggatctctcaggttgtggattccaaggatcaattcctctgtctttttctaaccttacacgtcttgcttccctacgtct |
164 |
Q |
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||||||||||| ||||||||||| ||| ||||| | ||||||| | ||||||| ||||| || ||||| ||||||||| ||| |||| |||| |
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| T |
34239225 |
cttctctcatttccttggatctcacagattgtgaactccaagggcctattcctccatctttctccaacctcacacgtcttactttcctaagtct |
34239318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 12249905 - 12249789
Alignment:
| Q |
75 |
tctcattaccttggatctctcaggttgtggattccaaggatcaattcctctgtctttttctaaccttacacgtcttgcttccctacgtctgtcagggaac |
174 |
Q |
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| T |
12249905 |
tctcactaccttagatctctcagattgtggattccaagggccaattcctctgtccttttctaacttcacacatcttaattccataagtctctcagaaaac |
12249806 |
T |
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| Q |
175 |
cacctaaatggttcaat |
191 |
Q |
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|| || ||||||||||| |
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| T |
12249805 |
caacttaatggttcaat |
12249789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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