View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_23 (Length: 284)
Name: NF1966_low_23
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 10754501 - 10754253
Alignment:
| Q |
22 |
tgtttgttaataaaactcattacaaccttcttggaaacaattttggtgcaatgaagtattagaatttaggagccaatcattaatgcattgcttagcttaa |
121 |
Q |
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| T |
10754501 |
tgtttgttaataaaactcattacaaccttcttgaaaacaattttggtgcaatgaagtattagaatttaggagtcaatcattaatgcattgcttagcttaa |
10754402 |
T |
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| Q |
122 |
tgttattgttgtgtcnnnnnnnaaaattcttttatcatattttgattttctactttcgaggaattattgttagatatatttcgtagtttaagaacaaata |
221 |
Q |
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| T |
10754401 |
tgttattgttgtgtctttttttaaaattcttttatcatattttgattttctactttcgaggaattattgttagatatatttcttagtttaagaacaaatg |
10754302 |
T |
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| Q |
222 |
aacaattaaccaattaactaacgtggatgtggttcacaattcaattttg |
270 |
Q |
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| T |
10754301 |
aacaattaaccaattaactaacatggatgtggttcacaattcaattttg |
10754253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 10751986 - 10751933
Alignment:
| Q |
33 |
aaaactcattacaaccttcttggaaacaattttggtgcaatgaagtattagaat |
86 |
Q |
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| T |
10751986 |
aaaactcattacaatcttcttgaaaacaattttggtgcaatgaagtattagaat |
10751933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 10751806 - 10751895
Alignment:
| Q |
1 |
aaccaaaaggatgtccaatattgtttgttaataaaa-ctcattacaaccttcttggaaacaattttggtgcaatgaagtattagaattta |
89 |
Q |
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| T |
10751806 |
aaccaaaaagatgtccattactgtttgttaataaaaactcattccaacattcttgaaaacagttttggtggaacgaagaattagaattta |
10751895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 8835665 - 8835497
Alignment:
| Q |
1 |
aaccaaaaggatgtccaatattgtttgttaataaaa-ctcattacaaccttcttggaaacaattttggtgcaatgaagtattagaatttaggagccaatc |
99 |
Q |
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| T |
8835665 |
aaccaaaaggatgccaattactgtttgttaataaaaactcattacaaccttcatgaaaaaaatt--gatgcaacgaagtattagaatttagaagccaat- |
8835569 |
T |
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| Q |
100 |
attaatgcattgcttagcttaatgttattgttgtgtcnnnnnnnaaaattcttttatcatattttgattttc |
171 |
Q |
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| T |
8835568 |
attaatgcactgcttagcttaatgttattgttgtgtcttttttaaaaattcttttatgatattttgattttc |
8835497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 8835468 - 8835359
Alignment:
| Q |
161 |
ttttgattttctactttcgaggaattattgt-tagatatatttcgtagtttaagaacaaataaacaattaaccaattaactaacgtggatgtggttcaca |
259 |
Q |
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| T |
8835468 |
ttttgattttctaccttcgaagaattatttaatagatacatt-cttagtttaggaataaatgaacaattaatcagtcaactaacgtgaacatggttcaca |
8835370 |
T |
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| Q |
260 |
attcaattttg |
270 |
Q |
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| T |
8835369 |
attgaattttg |
8835359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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