View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_24 (Length: 270)
Name: NF1966_low_24
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 36372767 - 36372996
Alignment:
| Q |
19 |
atatctgtgctatcaagctttgagtacaataaaaattcacgtcaatctagcccagtaagttcaatcttcttagttatatatagtttttattaaactacat |
118 |
Q |
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| T |
36372767 |
atatctgtgctatcaagctttgaatacaataaaaaatcacgtcaatctagcccagtaagttcaatcttcttagttatatatagtttttattaaactacat |
36372866 |
T |
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| Q |
119 |
ttcttactctcattcttccgtatacatttatttattattc-ttagtttattgatatttgtattttttgtaaattgtagatgtcgactgatgctagagtga |
217 |
Q |
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| T |
36372867 |
ttcttactctcattcttctgtatacatttatttattattctttagtttattgatatttata-tttttgtaaactgtagatatcgactgatgctagagtga |
36372965 |
T |
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| Q |
218 |
attccatacacagacagcctcataaatctga |
248 |
Q |
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| T |
36372966 |
attccgtacacagaaaacctcacaaatctga |
36372996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 233
Target Start/End: Original strand, 11415560 - 11415701
Alignment:
| Q |
92 |
ttatatatagtttttattaaactacatttcttactctcattcttccgtatacatttatttattattctt-agtttattgatatttgtattttttgtaaat |
190 |
Q |
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| T |
11415560 |
ttatatatagttttcattaaactacgtttctttgtctcattattatatatgcatttatttgctattctttagtttattgatatttatattttt-gcaaat |
11415658 |
T |
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| Q |
191 |
tgtagatgtcgactgatgctagagtgaattccatacacagaca |
233 |
Q |
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| T |
11415659 |
tgtagatgtggacagatgctagaccaaattccatacacagaca |
11415701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 8847179 - 8847100
Alignment:
| Q |
70 |
ccagtaagttcaatcttcttagttatatatagtttttattaaactacatttcttactctcattcttccgtatacatttat |
149 |
Q |
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| T |
8847179 |
ccagtaagtttaatcttttaaatcatatataatttttattaaacttgatttcttagtcttattcttctgtatacatttat |
8847100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 32252955 - 32252877
Alignment:
| Q |
181 |
ttttgtaaattgtagatgtcgactgatgctagagtgaattccatacacagacagcctcataaatctgataactgttcat |
259 |
Q |
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| T |
32252955 |
ttttgtaaattgtagatgtggattgatgcaagaataaattctatacatagacaacctcacaaatccgatcaatgttcat |
32252877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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