View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_26 (Length: 250)
Name: NF1966_low_26
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 32462120 - 32461880
Alignment:
| Q |
1 |
caattgagtcccgttgcccatcactcacattcaattataaattcttctattacatagaaaaattgttaatgggttggatctaatccatccatccaacaat |
100 |
Q |
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| T |
32462120 |
caattgagtcccgttgcccatcactcacattcaattataaattcatctaatacatagaaaaattgttaatgggttggatctaatccatccatctaacaat |
32462021 |
T |
|
| Q |
101 |
tttttcattatgatatgtaaatcgctattagaaaattttaaattatagacaggctaaatcaatttctaaaatgcaaaaaccctgtctcttatcac--gat |
198 |
Q |
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| T |
32462020 |
tattttgttatgatatttagatcgctattaaaaaaatttaaattataaacgggttaaatcagtctttaaaatgctaaaaatccgtctcttatcacgagat |
32461921 |
T |
|
| Q |
199 |
agagacaaaattaggtccaaataaattttatcgtatttcat |
239 |
Q |
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||||| |||||||| |||||||||||||||||||||||||| |
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| T |
32461920 |
agagataaaattagatccaaataaattttatcgtatttcat |
32461880 |
T |
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