View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_27 (Length: 249)
Name: NF1966_low_27
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 3432266 - 3432497
Alignment:
| Q |
1 |
cttcaagctctatcataatgtttctgattttaacaagtcctttcccgtaccttggaaccaaagtaaccacaacactgtcatcatcatcaactcccaaatc |
100 |
Q |
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| T |
3432266 |
cttcaagctctatcataatgtttctgattttaacaagtcctttcccgtaccttggaaccaaagtaaccacaacactgtcatcatcatcaactcccaaatc |
3432365 |
T |
|
| Q |
101 |
ttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgttcatgcaaagaatgaggtacattcacaaagctcccagcaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432366 |
ttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgttcatgcaaagaatgaggtacattcacaaagctcccagcaaac |
3432465 |
T |
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| Q |
201 |
tctgtattaaatggcttaaccaccttatcttt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3432466 |
tctgtattaaatggcttaaccaccttatcttt |
3432497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3426093 - 3426321
Alignment:
| Q |
1 |
cttcaagctctatcataatgtttctgattttaacaagtcctttcccgtaccttggaaccaaagtaaccacaacactgtcatcatcatcaactcccaaatc |
100 |
Q |
| |
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|||||||||||||| | || ||||||||||| |||| ||||||||| |||||||| ||||||||||||||||| || |||||||| ||| |||||||||| |
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| T |
3426093 |
cttcaagctctatcttgatatttctgattttgacaattcctttcccataccttggtaccaaagtaaccacaacgctatcatcatcctcagctcccaaatc |
3426192 |
T |
|
| Q |
101 |
ttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgttcatgcaaagaatgaggtacattcacaaagctcccagcaaac |
200 |
Q |
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| T |
3426193 |
ttccaacaaatccgttaatccaacccttaaacaactattagtcttcttctttttgtgatcatgggaagaatgaggtacattcacaaagcttccagcaaac |
3426292 |
T |
|
| Q |
201 |
tctgtattaaatggcttaaccaccttatc |
229 |
Q |
| |
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|| ||||||| |||||||| ||||||||| |
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| T |
3426293 |
tccgtattaactggcttaatcaccttatc |
3426321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 11913229 - 11913093
Alignment:
| Q |
16 |
taatgtttctgattttaacaagtcctttcccgtaccttggaaccaaagtaaccacaacactgtcatcatcatcaactcccaaatcttccagcaagtccgt |
115 |
Q |
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|||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
11913229 |
taatgtttgtgattttaacaagtcctttcccttaccatggaaccaaagtaaccacaacactgtcatcatcgtcagctcccaaatcttccagcaagtccgt |
11913130 |
T |
|
| Q |
116 |
taatccaaatctacaactactattaatattcttcatt |
152 |
Q |
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| T |
11913129 |
taatccaaatctgcaactactattaatattcttcatt |
11913093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 11898201 - 11897983
Alignment:
| Q |
1 |
cttcaagctctatcataatgtttctgattttaacaagtcctttcccgtaccttggaaccaaagtaaccacaacactgtcatcatcatcaactcccaaatc |
100 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||| |||||||||| |
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| T |
11898201 |
cttcaagctctatcttaatgtttgtgattttaacaagtcctttcctgtaccttggaaccaaagtaaccacaatgctatcatcatcctcagctcccaaatc |
11898102 |
T |
|
| Q |
101 |
ttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgttcatgcaaagaatgaggtacattcacaaagctcccagcaaac |
200 |
Q |
| |
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|| || ||| ||||||||||||| || ||| |||||| | |||||| || | || ||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
11898101 |
tttcaacaaatccgttaatccaacccttaaacagctattagtcttcttctttttgtgatcatgggaagaatgaggtacattcacaaagcttccagcaaac |
11898002 |
T |
|
| Q |
201 |
tctgtattaaatggcttaa |
219 |
Q |
| |
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|| ||||||| |||||||| |
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|
| T |
11898001 |
tccgtattaactggcttaa |
11897983 |
T |
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