View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_28 (Length: 249)
Name: NF1966_low_28
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 12568690 - 12568919
Alignment:
| Q |
13 |
tgttagcgtaactcaaataataaatatatagttttttaagaagaaaaattgataaaaattgataatcatctaatgtctaccataaatttcacagtgaaaa |
112 |
Q |
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| T |
12568690 |
tgttagcgtaactcaaataataaatatatagttttttaaaaagcaaaattgataaaaattgataatcatctaatgtctaccataaatttcacagtgaaaa |
12568789 |
T |
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| Q |
113 |
attgcaaatcatgttttgaagaataacaaagaataacac-aagacatgtatatcagaccaatttagaacgtggatctaaatatttctaaaaattcatatt |
211 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12568790 |
attgcagatcatgttttgaagaataacaaagaataacacaaagatatatatatcaggccaatttagaacgtggatctaaatatttctaaaaattcacatt |
12568889 |
T |
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| Q |
212 |
caaaaaatatatgttcaaccgtttcttctc |
241 |
Q |
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|||||||||||| |||||||||||| |||| |
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| T |
12568890 |
caaaaaatatatattcaaccgtttcatctc |
12568919 |
T |
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