View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_29 (Length: 246)
Name: NF1966_low_29
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_29 |
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| [»] scaffold0729 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 7891079 - 7890862
Alignment:
| Q |
18 |
tgctaaacatccggtgggagtagaagctcgggtgaaagatgtgattcaactattaaacagcgaacaagcagaaaataccatgattgtagggatatggggg |
117 |
Q |
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| T |
7891079 |
tgctgaacatccggtgggagtagaagctcgggtgaaagatgtgattcaactattgaacagcgaacaagcagaaaataccatgattgtagggatatggggg |
7890980 |
T |
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| Q |
118 |
atgactggggttggtaaaacaataattgctaaagccacttataatcaaatgagtttcacttttgattgcaagagctttctctataatgtcaatgaaactt |
217 |
Q |
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| T |
7890979 |
atggctggggttggtaaaacaataattgctaaagccacttataatcaaatgagtttcacttttgattgcaagagcattctcaagaatgtcaatgaaactt |
7890880 |
T |
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| Q |
218 |
gcaaatcgggtgatgatg |
235 |
Q |
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| T |
7890879 |
gcaaatcgggtgatgatg |
7890862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 7876307 - 7876143
Alignment:
| Q |
18 |
tgctaaacatccggtgggagtagaagctcgggtgaaagatgtgattcaactattaaacagcgaacaagcagaaaataccatgattgtagggatatggggg |
117 |
Q |
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| T |
7876307 |
tgctaaacacccagtgggagtagaagctcggatgcaagatgttattcaactattgaacgcggaacaaccagaaaataccataatcataggggtatggggg |
7876208 |
T |
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| Q |
118 |
atgactggggttggtaaaacaataattgctaaagccacttataatcaaatgagtttcacttttga |
182 |
Q |
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| T |
7876207 |
acaaatggggttggtaaaacaacaatcgccaaagccacttgaaatcaaatgagttacaattttga |
7876143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 6792114 - 6792177
Alignment:
| Q |
104 |
tagggatatgggggatgactggggttggtaaaacaataattgctaaagccacttataatcaaat |
167 |
Q |
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| T |
6792114 |
tagggatatgggggatgacagggattggtaaatcaaccattgccaaagccatttatgatcaaat |
6792177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 6748600 - 6748661
Alignment:
| Q |
106 |
gggatatgggggatgactggggttggtaaaacaataattgctaaagccacttataatcaaat |
167 |
Q |
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| T |
6748600 |
gggatatgggggatggcaggggttggtaaatcagctattgctaaagccatttatgatcaaat |
6748661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 6515 - 6452
Alignment:
| Q |
104 |
tagggatatgggggatgactggggttggtaaaacaataattgctaaagccacttataatcaaat |
167 |
Q |
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| T |
6515 |
tagggatatgggggatgacagggattggtaaatcaaccattgccaaagccatttatgatcaaat |
6452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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