View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_3 (Length: 527)
Name: NF1966_low_3
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 42120920 - 42120575
Alignment:
| Q |
1 |
taattaaggtacctgagaagagaggttttggtccattagaagaggtgaaggagatgtagcgaatgttttgacgaggcggaaggagttattggatttggga |
100 |
Q |
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| T |
42120920 |
taattaaggtacctgagaagagaggttttggtccattagaagaggtgaaggagatgtagcgaatgttttgacgaggcggaaggagttattggatttggga |
42120821 |
T |
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| Q |
101 |
ttggaagataagtcagtgtttggagaatgatgagagtgagagaaagaag---------aagaaaaagctaaggttgaaatcgcagttgctgttgttgcta |
191 |
Q |
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| T |
42120820 |
ttggaagataagtcagtgtttggagaatgatgagagtgagagaaagaagaagataaagaagaaaaagctaaggttgaaatcgcagttgctgttgttgcta |
42120721 |
T |
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| Q |
192 |
ttgaccttagaaatgccattttactggaatttatttgtg--tttgtttata---cttgaactcagaagatgcatttttgggggtaggtgtttttctttcc |
286 |
Q |
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| T |
42120720 |
ttgaccttagaaatgccattttactggaatttatttgtgaatttgtttatacttcttcaactcagaagatgcatttttgggggtaggtgtttttctttcc |
42120621 |
T |
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| Q |
287 |
ctgnnnnnnnngtcttgcttgcggctttgttctagatagatccacac |
333 |
Q |
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| T |
42120620 |
ct-ttttttttgtcttgcttgcggctttgttctagatagatccacac |
42120575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 393
Target Start/End: Complemental strand, 42120544 - 42120515
Alignment:
| Q |
364 |
acagaactcggaattattagatcattctct |
393 |
Q |
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| T |
42120544 |
acagaactcggaattattagatcattctct |
42120515 |
T |
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