View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_30 (Length: 242)
Name: NF1966_low_30
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 12698119 - 12697894
Alignment:
| Q |
1 |
gagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattgaaaatgttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12698119 |
gagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattgaaaatgttct |
12698020 |
T |
|
| Q |
101 |
cttcaagacttgtaactttcaaagcagtgtcttctattaacatggatgtataattgaactttaatgctattattgagaagggatgaataatatgtattta |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12698019 |
gttcaagacttgtaactttcaaagtagtgtcttctattaacatggatgtataattgaactttaatgctattattgagaagggatgaataatatatattta |
12697920 |
T |
|
| Q |
201 |
gttaagtatcatttgattgatccatt |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
12697919 |
gttaagtatcatttgattgatccatt |
12697894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 45077947 - 45077755
Alignment:
| Q |
1 |
gagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattgaaaatgttct |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
45077947 |
gagttacaagtaatgtggttcctaaaccatgtgaattgctgcaagagaaggaaattgaatgtccttttccaacagataaactagccatcgaaaatgttca |
45077848 |
T |
|
| Q |
101 |
cttcaagacttgtaactttcaaagcagtgtcttctattaacatggatgtataa-ttgaactttaatgctattattgagaagggatgaataata |
192 |
Q |
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| T |
45077847 |
attcaagacttgtaacttccaaagtagtgtcttctgataacatggatgtaaaattttaattttaatgctataattgaaaaggaatgaataata |
45077755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 45082243 - 45082072
Alignment:
| Q |
1 |
gagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattgaaaatgttct |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
45082243 |
gagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtccttttccaagagataaactacccattgaaaatgttca |
45082144 |
T |
|
| Q |
101 |
cttcaagacttgtaactttcaaagcagtgtcttctattaacatggatgt-ataattgaactttaatgctatt |
171 |
Q |
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||||||||||| ||||| ||||| |||||||||| ||| ||||||| | ||||||| |||||||||||| |
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| T |
45082143 |
attcaagacttgcaacttccaaagtagtgtcttctgataatgtggatgtaaaaattgaaatttaatgctatt |
45082072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 45067157 - 45067034
Alignment:
| Q |
1 |
gagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattgaaaatgttct |
100 |
Q |
| |
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||||| ||||||| | |||||||||||||||||| |||||| || |||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45067157 |
gagttgcaagtaatgcggttcctaaaccatgtgatatgctgccagagaagaaaatcgaatgtccttttccaacagataaactacccattgaaaatgttca |
45067058 |
T |
|
| Q |
101 |
cttcaagacttgtaactttcaaag |
124 |
Q |
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||||||||||||||||||||||| |
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| T |
45067057 |
gttcaagacttgtaactttcaaag |
45067034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 45074717 - 45074584
Alignment:
| Q |
1 |
gagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaa---ttgaatgtccttttccaacagttaaactacccattgaaaatgt |
97 |
Q |
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||||||||||||| ||| ||||| ||| |||||||||||| || ||| | || ||||||||||||||||||| | |||||| ||||||||||||| |
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| T |
45074717 |
gagttacaagtaatgtgagtcctacaccctgtgaattgctggcagagaaagaaaaatttgaatgtccttttccaactgataaacttaccattgaaaatgt |
45074618 |
T |
|
| Q |
98 |
tctcttcaagacttgtaactttcaaagcagtgtc |
131 |
Q |
| |
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|| ||||||||||||||||| |||| |||||| |
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| T |
45074617 |
tcagttcaagacttgtaacttcaaaagtagtgtc |
45074584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 34504483 - 34504349
Alignment:
| Q |
1 |
gagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaactacccattgaaaatgttct |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| || |||| |||||||||||| |||||||||| |||| | | |||||| |||||| |
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| T |
34504483 |
gagttacaagtaatgtggttcctaaaccatgtgatctgctgtcagagaagaaaattgaatgtccctttccaacagataaattggctattgaagatgttca |
34504384 |
T |
|
| Q |
101 |
cttcaagacttgtaactttcaaagcagtgtcttct |
135 |
Q |
| |
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||||||||||||||| || |||| ||||| |||| |
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|
| T |
34504383 |
gttcaagacttgtaacattaaaagtagtgtgttct |
34504349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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