View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_31 (Length: 238)
Name: NF1966_low_31
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_31 |
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| [»] scaffold0158 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7726202 - 7725980
Alignment:
| Q |
1 |
ttcttgtaatttcatcgatgaggttgcatgcttttttggtaattttttgttccaatttctctattaagtttttgcaaaattgaatttaggttgctgaatt |
100 |
Q |
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| T |
7726202 |
ttcttgtaatttcatcgatgaggttgcatgcttttttggtaatttttttttccaatttctcaattaagtttttgcaaaattgaatttaggttgctgaatt |
7726103 |
T |
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| Q |
101 |
tgttcaggaaactcactttaccgtttgagatagaattacatgattcatgttggatttactctataagttgcatttccaatataatgtggagcttattgaa |
200 |
Q |
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| T |
7726102 |
tgttcaggaaactcactttaccgtttgagatagaattacatgattcatgttggatttactctataagttgcatttccaatataatgtggagcttattgaa |
7726003 |
T |
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| Q |
201 |
aacgttaaatttcattcatattg |
223 |
Q |
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|| |||||||||||||||||||| |
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| T |
7726002 |
aaggttaaatttcattcatattg |
7725980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 7736559 - 7736377
Alignment:
| Q |
1 |
ttcttgtaatttcatcgatgaggttgcatgcttttttggtaattttttgttccaatttctctattaagtttttgca-aaattgaatttaggttgctgaat |
99 |
Q |
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||||||||||||||| |||||| ||| ||| |||||||||||||||| ||||||||||||||||| || |||||| |||||||||||||||| |||||| |
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| T |
7736559 |
ttcttgtaatttcattgatgagattgtatg-ttttttggtaatttttgtttccaatttctctattacgtgtttgcacaaattgaatttaggttactgaat |
7736461 |
T |
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| Q |
100 |
ttgttcaggaaactcactttaccgtttgagatagaattacatgattcatgttggatttactctataagttgcatttccaatata |
183 |
Q |
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| T |
7736460 |
ttgatcaggaaacttactttaccgtttgagaaataatcatatgattccggttggatttactctataagtcacatttccaatata |
7736377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 45670662 - 45670625
Alignment:
| Q |
183 |
aatgtggagcttattgaaaacgttaaatttcattcata |
220 |
Q |
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| T |
45670662 |
aatgtggagcttattgaaaaggtcaaatttcattcata |
45670625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 220
Target Start/End: Complemental strand, 27083 - 27045
Alignment:
| Q |
182 |
taatgtggagcttattgaaaacgttaaatttcattcata |
220 |
Q |
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| T |
27083 |
taatgtggagcttattgaaaaggttaagtttcattcata |
27045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 14602956 - 14602994
Alignment:
| Q |
183 |
aatgtggagcttattgaaaacgttaaatttcattcatat |
221 |
Q |
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| T |
14602956 |
aatgtggagcttattgaaaaggttaagtttcattcatat |
14602994 |
T |
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