View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_35 (Length: 206)
Name: NF1966_low_35
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 4752308 - 4752443
Alignment:
| Q |
9 |
gatgtccaagaaaatttcgaaccgcaagagcctccgctgtactttgatcagacaacctcaaacacctagaacgtatgtctccaacagcaggaccacctat |
108 |
Q |
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| T |
4752308 |
gatgaccaagcaaatttcgaaccgcaagagcctccgctgtactttgatcagacaacctcaaacacctagaacgtatgtctccaacagcaggaccacctat |
4752407 |
T |
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| Q |
109 |
aacgcgcgcgcacacacaccacaatcaaccaaatccct |
146 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
4752408 |
aacgcgcgcg--cacacaccacaatcaaccaaatccct |
4752443 |
T |
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