View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1966_low_38 (Length: 201)
Name: NF1966_low_38
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_38 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 32492661 - 32492841
Alignment:
| Q |
20 |
atctgaatcaaagtgggacccacatttggtttaatagcttcaacaccaagcataatcaactttgatattgataccttcaaaatagcatcaccacaacttg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32492661 |
atctgaatcaaagtgggacccacatttggtttaatagcttcaacaccaagcataatcaactt-gatattgataccttcaaaatagcatcaccacaacttg |
32492759 |
T |
|
| Q |
120 |
atgttgatctcacgtattcaatgtccaattaacggttcttcaatcaatatcataaagaaagtttgtacccaaattgagtcgt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32492760 |
atgttgatctcacgtattcaatgtccaattaacggttcttcaatcaatatcataaagaaagtttgtacccaaattgagtcgt |
32492841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University