View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_6 (Length: 474)
Name: NF1966_low_6
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 42474944 - 42474500
Alignment:
| Q |
1 |
ctgtactcagtagtcagtacatactaaagcacatgtaaccattggaaaaaccaagagttgcatatgactcaacaagaataagattgcatgcatcatggaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474944 |
ctgtactcagtagccagtacatactaaagcacatgtaaccattggaaaaaccaagagttgcatatgactcaacaagaataagattgcatgcatcatggaa |
42474845 |
T |
|
| Q |
101 |
taatttgcacgtagctaagaaaagactaagaaaatctaggaaaaaattgaacatgtatatataaaatcacaagtaaagcatagaccagtagctccgtaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474844 |
taatttgcacgtagctaagaaaagactaagaaaatctaggaaaaaattgaacatgtatatataaaatcacaagtaaagcatagaccagtagctccgtaaa |
42474745 |
T |
|
| Q |
201 |
tgtttacagcctacaaaagcatgtatccgataatgctcaaaagcttcaatgacaaaaagaaatgatgtacaaaaatgctccataagtgcatcatggacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42474744 |
tgtttacagcctacaaaagcatgtatccgataatgctcaaaagcttcaatgacaaaaagaaatgatgtacaaaaatgctccataagtgcatcatggaata |
42474645 |
T |
|
| Q |
301 |
acttgtatgtagtctaaagcttcaatgacataaaagaaatgctctacacaaaactgattatataaatgctaacttgctctgctaannnnnnnnacgtcca |
400 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
42474644 |
acttgtatgtagtctaaagcttcaatgacat-aaagaaatgctctacacaaaactgattatataaatgcttacttgctctgctaattttttttac----- |
42474551 |
T |
|
| Q |
401 |
accagcaaagtcttttggtggttcaatccataagttctcaaaagcatttggttct |
455 |
Q |
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| T |
42474550 |
----gcaaagtcttttggtggttcaatccataagttctcaaaagcatttggttct |
42474500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 22 - 455
Target Start/End: Complemental strand, 42468254 - 42467837
Alignment:
| Q |
22 |
tactaaagcacatgtaaccattggaaaaacc--aagagttgcatatgactcaacaagaataagattgcatgcatcatggaataatttgcacgtagctaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
42468254 |
tactaaagcacatgtaaccattggaaaaaccttaagatttgcat--gactcaacaagaataagattgcatgcatcatggaataatttgcacgcagctaag |
42468157 |
T |
|
| Q |
120 |
aaaagactaagaaaatctaggaaaaaattgaacatgtatatataaaatcacaagtaaagcatagaccagtagctccgtaaatgtttacagcctacaaaag |
219 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42468156 |
aaaagactaagaaaatctatgaaaaaattgaacatttataaataaaatcacaagaaaagcatagaccagtagctccataaatgtttacagcctacaaaag |
42468057 |
T |
|
| Q |
220 |
catgtatccgataatgctcaaaagcttcaatgacaaaaagaaatgatgtacaaaaatgctccataagtgcatcatggactaacttgtatgtagtctaaag |
319 |
Q |
| |
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|| ||||| ||||||||| |||||||||||||||||| | |||||||| ||||||| |||||||| ||||||||||||||||||||| |
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| T |
42468056 |
aatatatcctataatgctcgaaagcttcaatgacaaaatg-------------aaatgctctataagtgtatcatggaataacttgtatgtagtctaaag |
42467970 |
T |
|
| Q |
320 |
cttc-aatgacataaaagaaatgctctacacaaaactgattatataaatgc-taacttgctctgctaannnnnnnnacgtccaaccagcaaagtcttttg |
417 |
Q |
| |
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|||| |||||| ||||||||| ||||||||||||||||||||||||||| | |||||||| ||||| || |||| |||||||||||||||| |
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| T |
42467969 |
cttcaaatgac---aaagaaatg-tctacacaaaactgattatataaatgctttacttgctccgctaattttttttacatccagccagcaaagtcttttg |
42467874 |
T |
|
| Q |
418 |
gtggttcaatccataagttctcaaaagcatttggttct |
455 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
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|
| T |
42467873 |
gtggttcaat-cataagttctcaaaagcatttggttct |
42467837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 42480414 - 42480200
Alignment:
| Q |
22 |
tactaaagcacatgtaaccattggaaaaacc--aagagttgcatatgactcaacaagaataagattgcatgcatcatggaataatttgcacgtagctaag |
119 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||| |||| |||||||| |
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| T |
42480414 |
tactaatgcacatgtaaccattggagaaaccttaagatttgcatataactcaacaagaataagattgcatgcatcatgggatagtttgtttgtagctaac |
42480315 |
T |
|
| Q |
120 |
aa-aagactaagaaaatctaggaaaaaat-----tgaacatgtatatataaaatcacaagtaaagcatagaccagtagctccgtaaatgtttacagccta |
213 |
Q |
| |
|
|| ||||||| |||||| ||||||||| | |||||||||||| || |||| |||||||||||||| |||| ||||||| |||||||||| |||||| |
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| T |
42480314 |
aataagactaggaaaatttaggaaaaattaaatttgaacatgtataaatcaaataacaagtaaagcataaaccaatagctccataaatgtttatagccta |
42480215 |
T |
|
| Q |
214 |
caaaagcatgtatcc |
228 |
Q |
| |
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||||||||||||| |
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| T |
42480214 |
ataaagcatgtatcc |
42480200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 455
Target Start/End: Complemental strand, 42480093 - 42480035
Alignment:
| Q |
397 |
tccaaccagcaaagtcttttggtggttcaatccataagttctcaaaagcatttggttct |
455 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
42480093 |
tccagccagtaaagtcttttggtggttcaatccagaagttctcaaaagtatttggttct |
42480035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 385
Target Start/End: Complemental strand, 42480188 - 42480111
Alignment:
| Q |
306 |
tatgtagtctaaagcttcaatgacataaaagaaatgctctacacaaaactgattatataaatgctaacttgctctgctaa |
385 |
Q |
| |
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|||||||||| ||||||| ||| || |||| ||||||||||||||||||||||| | ||||||| |||||||| ||||| |
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| T |
42480188 |
tatgtagtctcaagcttcgatgcca-aaaataaatgctctacacaaaactgatt-tgcaaatgcttacttgctccgctaa |
42480111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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