View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1966_low_8 (Length: 413)
Name: NF1966_low_8
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 41113046 - 41113444
Alignment:
| Q |
16 |
acaagttcatagggtgaactagtattacatatctcccaccttgggcgagttatgtgagccgttaaatgtgcaatgttctacaaatttatcacgatggaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41113046 |
acaagttcatagggtgaactagtattacatatctcccaccttgggcgagttatgtgagccgttaaatgtgcaatgttctacaaatttatcacgatggaag |
41113145 |
T |
|
| Q |
116 |
gtgccctccagaaccatgaaattgatacattagtagtttagtttagaggttctcctcctatttaaattcgctttccgccacaataagctgaataaataac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41113146 |
gtgccctccagaaccatgaaattgatacattagtagtttag-----aggttc--ctcctatttaaattcgctttccgccacaataagctgaataaataac |
41113238 |
T |
|
| Q |
216 |
aaatctcaagaccaatgttataaaattacctttcaagtagatgaatgttgtttcagagtgtatgtttggattcaatataaagaaaaccaccccattacga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41113239 |
aaatctcaagaccaatgttataaaattacctttcaagtagatgcatgttgtttcagagtgtatgtttggattcaatataaagaaaaccaccccattacga |
41113338 |
T |
|
| Q |
316 |
ttgaagca-----------------tagatgttctgttgctgtcaaacattatttattgtctctaatcctcaattaaaagtgataaagaaatattttgct |
398 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41113339 |
ttgaagcatgatttcgattgaagcgtagatgttctgttgctgtcaaacattatttattgtctctaatcctcaattaaaagtgataaagaaatattttgct |
41113438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 41098290 - 41098341
Alignment:
| Q |
333 |
tgttgctgtcaaacattatttattgtctctaatcctcaattaaaagtgataa |
384 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| |||| |||||||||||||| |
|
|
| T |
41098290 |
tgttgctatcaaacattattgattgtttctaaacctctattaaaagtgataa |
41098341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University