View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1966_low_9 (Length: 405)
Name: NF1966_low_9
Description: NF1966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1966_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 36728903 - 36728528
Alignment:
| Q |
19 |
aaatgggtttgatatcaggcttgtcacctttattccaaatccaaagaccatgaagattaaatttgcaatcttccactccttctcctttcaattatgacaa |
118 |
Q |
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| T |
36728903 |
aaatggatttgatatcaggcttgtcacctttattccaaatccaaagaccatgaagattaaatttgcaatattccactccttctcctttcaattatgacaa |
36728804 |
T |
|
| Q |
119 |
atggtttcagaagatcgtgaggttcaatgtcacaagcattcgcgagagcttgtgcaaaggtgagagtggctgtgcgattaccagtacgcggagcggatgg |
218 |
Q |
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| T |
36728803 |
atggtttcagaagatcgtgaggttcgatgtcacaagcattcgcgagagcttgtgcaaaggtgagagtggctgtgcggttaccagtacgtgcagcggatgg |
36728704 |
T |
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| Q |
219 |
cggcagagaggccaataaagaccatggcacaatgatagccatggttacttgcgctccaagaaaagaaataaaccatggtttcagaattcaaaggattata |
318 |
Q |
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| T |
36728703 |
cggcagagaggccaataaagaccatggaacaatgatagccatggttacttgcgctccaagaaaagaaataaaccatggtttcagaattcaaaggattata |
36728604 |
T |
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| Q |
319 |
catctgccaccattaatgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctcatcacacaggt |
394 |
Q |
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| T |
36728603 |
catctgccaccattaatgaatctttaacgtatatatgagaaaaactaaagatataatcgtatctcatcacacaggt |
36728528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 388
Target Start/End: Complemental strand, 36715262 - 36714914
Alignment:
| Q |
35 |
aggcttgtcacctttattccaaatccaaagaccatgaagattaaatttgcaatcttccactccttctcctttcaattatgacaaatggtttcagaagatc |
134 |
Q |
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| T |
36715262 |
aggcctgtcacctttattcaaaatccaacgaccatgaagaataaattttcaatcttccactcctt------tcaattatgacaaatggtttcagaagatc |
36715169 |
T |
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| Q |
135 |
gtgaggttcaatgtcacaagcattcgcgagagcttgtgcaaaggtgagagtggctgtgcgattaccagtacgcggagcggatggcggcagagaggccaat |
234 |
Q |
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| T |
36715168 |
gtgaggttcaatgtcacaagcattcgcaagagcttgtgcaaaggtctgagtagttgtgcggttgccaataggcatagcggatggcggcagagaggccaaa |
36715069 |
T |
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| Q |
235 |
aaagaccatggcacaatgatagccatggttacttgcgctccaagaaaagaaat-aaaccatggtttcagaattcaaaggattatacatctgccaccatta |
333 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||| || ||| ||| || |
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| T |
36715068 |
aaagaccatggcacaatgttagccatggttacttgcgctccaagaaaatcaataaaaccatgatttcagaattcaaaggataatatatatgctaccgttt |
36714969 |
T |
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| Q |
334 |
atgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctcatcac |
388 |
Q |
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| T |
36714968 |
atgagtcttaaacgtatatatgaggaaaactaaagatataatcttatctcatcac |
36714914 |
T |
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