View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19670_high_1 (Length: 737)
Name: NF19670_high_1
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19670_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 4369665 - 4369274
Alignment:
| Q |
14 |
cagagaacaaatgatggaaaagtgatttttctttgttacactagttttgtctttgtccatgttctgaattcaacattggttagaaaaatataaggttcgg |
113 |
Q |
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| T |
4369665 |
cagagaacaaaagatggaaaagtgatttttctttgtttcactagtcttgtctttgtccatgttctga-ttcaacattggttagaaaaatataaggttcgg |
4369567 |
T |
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| Q |
114 |
aatttagattataaaccctacattttactctaatactttgctacgttaacctaaaccctttgtctggttattttggtgttatatatctgcatttgtatgc |
213 |
Q |
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| T |
4369566 |
aatttagattataaaccctacattttactctaatactttgctacgttaacctaaaccctttgtctggttattttggtgttatatatctgcatttgtacgc |
4369467 |
T |
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| Q |
214 |
attataggttctttttatttgcatgtgtctttgttattttgattataatgaattctgggattttatgttctaatttacatgcatattgatcaattcttac |
313 |
Q |
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| T |
4369466 |
attataggttctttttatttgcatgtgtctttgttattttgattataatgaattctgggattttatgttctaatttacatgcatattgatcaattcttac |
4369367 |
T |
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| Q |
314 |
caatataatatttcttttaattatttttctttatatatggtccagtaatattgtgatatctgtcaccttgatgttaatctgatatatttgttg |
406 |
Q |
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| T |
4369366 |
caatataatatttcttttaattatttttctttatgtatggtccagaaatattgtgatatttgtcaccttgatgttaatctgatatatttgttg |
4369274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 402 - 720
Target Start/End: Complemental strand, 4369238 - 4368920
Alignment:
| Q |
402 |
tgttgataatatcatttctgcatgattttgcatatattaatatgaattcaatatacaatttgtatgattttctttgatgttttgtttgttttctgattat |
501 |
Q |
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| T |
4369238 |
tgttgatagtatcatttctgcatgattttgcatatattaatatgaattcaatatacaatttgcatgattttctttgatgttttgtttgttttctgattat |
4369139 |
T |
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| Q |
502 |
gtttacgaatttgcagaaacttataaacacgcctttaatttgccggtagcgaagataacaagtaaacaggaaatcaattgttctactatggaagatgtca |
601 |
Q |
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| T |
4369138 |
gtttacgaatttgcagaaacttataaacacgcctttaatttgtgggtagcaaagataacaagtaaacaggaaatcaattgttctactatggaagatgtca |
4369039 |
T |
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| Q |
602 |
atataaaagctggtgtgaatgaagaagatggtttatatacagaagatggaacaattgacattcacaaaaaccctgccaacaagaaaaagacaggaaattg |
701 |
Q |
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| T |
4369038 |
atataaaagctggtgtgaatgaagaagatggtttatatacagaagatggaacaattgacattcacaaaaaccctgccaacaagaaaaagacaggaaattg |
4368939 |
T |
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| Q |
702 |
gaaagcatgccgctttatt |
720 |
Q |
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| T |
4368938 |
gaaagcatgccgctttatt |
4368920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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