View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19670_high_2 (Length: 588)
Name: NF19670_high_2
Description: NF19670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19670_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 180 - 408
Target Start/End: Complemental strand, 16594785 - 16594559
Alignment:
| Q |
180 |
agattaaaaagagatcgaagaaaaagaaaaggaagggtgatgatgaggatgaatggtgatgccataacacgtccaacaatttctagacctaattcctggt |
279 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16594785 |
agattaaaaagagaccgaagaagaagaaaaggaagggtgatgatgaggatgaatggtgatgccataacacgtccaacaatttctagacctaattcctggt |
16594686 |
T |
|
| Q |
280 |
tcctcaatcctatccatttttatgtttaattcttttgttttgatttggaacatgtggctttgggttttagatatgagttttttagatccagttgtttggg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
16594685 |
tcctcaatcctatccatttttatgtttaattcttttgttttgatttggaacatgtggctatgagttttagatatgagtttttta-atccag-tgtttggg |
16594588 |
T |
|
| Q |
380 |
tttcaatacattatgttatgtgtctgaac |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16594587 |
tttcaatacattatgttatgtgtctgaac |
16594559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 16594969 - 16594809
Alignment:
| Q |
24 |
atttgtcactctcattaatgactttgcaatgacaacaaaaacttaatgaattgcgatgaatctcaaatgatgaagattgattgaacatggaggatgcnnn |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16594969 |
atttgtcactctcattaatgactttgcaatgacaataaaaacttaatgaattgcgatgaatctcaaatgatgaagattgattgaacatggaggatgcttt |
16594870 |
T |
|
| Q |
124 |
nnnnnnnnnnnnnnncttctttcagatctaaactcatataagcaccaccatctcttagatt |
184 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16594869 |
ttgtttttgttttttgttctttcagatctaaactcatataaacaccaccatctcttagatt |
16594809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 484 - 581
Target Start/End: Complemental strand, 16594483 - 16594386
Alignment:
| Q |
484 |
ttcatacatttataaatattaattaagttagttaaataaattgaattttttaagttataattgtagttgcccttagtatacttttgtattgatgatgt |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
16594483 |
ttcatacatttataaatattaattaagttagttaaataaattgaattttttaagttataattgtagttgcccttagtatgcttttgttttgatgatgt |
16594386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University